Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4671g00001 ATGCAGGAATTACATCCCATCGGAGGAGGAAGGCTTTTCGTCGGTGGCGGCGGCGGAAGTGACAGGAGGCTGAGGCCCCACCACCACAACAACCTCCAGCAGGCGTTGAAGTGCCCCCGCTGTGACTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGCCATTTCTGCAAGAACTGCCGAAGGTACTGGACGAAAGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGCGGTTGCCGGAAATCAAAGCGCTCCAACAAGCCCAAGAACAACACCAACAACAACTCATCCTCGTCCTCAGAAATAGCTTCAGCTACCACACCTAACCCGCAAGCAGGGCCACAGCCACCAGAGCCAGAGCGCAAATCCAACTCGAACTCCAGCAGCGAAAGCTCCACCCTCACCGCCGCCGCCGCCGCCGCCGCCACAACAGAGGCGATGTCGGCGCTGACATCAAACGCTGCATCGAACAACAACTTGTTATTGGACAACTTTCGCGAGTCGAAGTTGTTCAACAACCCTGTTTTGGAGTCGGAACAAGGTGGTGGTGGTGGAGATCACTGTGGCATTTTCTCTGATATAGGTAGCTTCACGAGCCTCATAGCTTCCCCAAACGAAGCATTGCCGTTTGGGTTTGGTAATAACGTCCTTGATGCGTCGTCGTTTCGGTTCAGCGCTACTCATCAGCATGGGAATGATCAGCTACAAGCAGCACCAGGTGGTGACCAGTGGCAACAGCAGAAGATGTTGGGCATGAGCATGAGCACTGATCATCATCATCAGCATGAGTTCATGCTCGATCACACGGTGCCTCTTGAGTTTTCTACTCTGCAAAATAAAACTGGGCATGGAGGATTTGGATCGTTGGATTGGCATGCTGGTACAGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAGGCTTACTGGACTCACACTCACTGGTCTGATCAAGACAATCCCACTCTCTTTCATCTTCCCTGA 1005 0.5333 MQELHPIGGGRLFVGGGGGSDRRLRPHHHNNLQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKNNTNNNSSSSSEIASATTPNPQAGPQPPEPERKSNSNSSSESSTLTAAAAAAATTEAMSALTSNAASNNNLLLDNFRESKLFNNPVLESEQGGGGGDHCGIFSDIGSFTSLIASPNEALPFGFGNNVLDASSFRFSATHQHGNDQLQAAPGGDQWQQQKMLGMSMSTDHHHQHEFMLDHTVPLEFSTLQNKTGHGGFGSLDWHAGTDQGLFDLPNTVDQAYWTHTHWSDQDNPTLFHLP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4671g00001 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 238 IPR045174 GO:0003700|GO:0006355
Gabi4671g00001 334 MobiDBLite consensus disorder prediction 1 26 - -
Gabi4671g00001 334 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Gabi4671g00001 334 MobiDBLite consensus disorder prediction 80 145 - -
Gabi4671g00001 334 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Gabi4671g00001 334 MobiDBLite consensus disorder prediction 124 145 - -
Gabi4671g00001 334 MobiDBLite consensus disorder prediction 94 115 - -
Gabi4671g00001 334 Pfam Dof domain, zinc finger 34 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4671g00001 Gabi-Chr4671 37237 38782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4671g00001 21 334 C2C2-Dof Transcription Factor Family AT5G60850 41.693 1.84e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4671g00001 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4671g00001 - - gmx:778116 356.295