Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi466g00002 ATGGCAACCATTGCCACCTTCTTCAACAACTTGTTCCTCTATCTTCTTATCCTCCTTGTCCACCTTGGCTGCTTCACCATCACCGGAAAACAAGACAACCGCCACTTGCCACCGTCAAAGAAACGCAAAATCTCACCTTTGTCTCAACCCTCCTCCCCTTCCCACCCCAAACTCAAAACCCACAGAGCCCTTTCTTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACAAAATTCTACAAAACGAAAACCGCCACCCCAGCCGCCACCTTTTCATCACCTCAATCCTCGTCAACCTCCGCCTCCGCCGCCGCCGCCGCCGCACATTCTCTAACCACCTCCAGATCCTCCCAGCAATCACTCATCTCCCTGACACAACCCGACCCGCTTTTTCCGGATCCTTCCTGCAGAAAAAAATCCGGGTCGTGCCCAGAATCCGACATCTCCGCCGACAACAACCTCTTCTTCCCCCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAACCCAACCTCCTCGAACAGCACCAATCCACCAAGCACGCCGTGTCGGAGCTCGTAGCATCGGACCCGGGTCACAACATCGTCCAGATTATATTCAAGTCGGGTTGGCCCGAGACCCGGGAATTCCCCAAGATAAACCGGATCCTCAAGATCCACAACAGCCCGAAGATCCTCTCCAAGTTCGAGGAGTATCGCGAGACCGTTAAATCCAAGGCGGCGCGTCACGGCGGCGCGTCGAGGCGTCACGACGAGCGCTGCATCGCCGACGGCAACGAGCTCATGCGTTTCCACTGCTCAACGTTCCTATGCGACTTGGGACTCAACGGGGATTCCTCAATTTGTTCCCAACAATTTTGTAATATTTGCGGAATCATAAAATCAGGGTTCTCACCCAAGTTGGACGGAATTTCCACGCTGTCATCCAGCTGGAGGGGACACGCGTCAATTCCTGATGACATCGAGCGTGAATTTCGCTTCATGAACGTGAAACGGGCCATGCTAGTTTGTCGGGTAATTGCGGGTCGGATCGGGTCGGATTCAGATGAGGTTGATAAAGAGGATGGGGGTTATGATTCGCTGATGGCGCGCGGAGGGAGCGGAGTTTACACCCGGCTTGATGAGGAGGAGCTATTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTTTGA 1206 0.5365 MATIATFFNNLFLYLLILLVHLGCFTITGKQDNRHLPPSKKRKISPLSQPSSPSHPKLKTHRALSSSWHFIKHLFSTKFYKTKTATPAATFSSPQSSSTSASAAAAAAHSLTTSRSSQQSLISLTQPDPLFPDPSCRKKSGSCPESDISADNNLFFPLRNDIFPCTACGEIFQKPNLLEQHQSTKHAVSELVASDPGHNIVQIIFKSGWPETREFPKINRILKIHNSPKILSKFEEYRETVKSKAARHGGASRRHDERCIADGNELMRFHCSTFLCDLGLNGDSSICSQQFCNICGIIKSGFSPKLDGISTLSSSWRGHASIPDDIEREFRFMNVKRAMLVCRVIAGRIGSDSDEVDKEDGGYDSLMARGGSGVYTRLDEEELLVFNPRAVLPCFVIVYSV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi466g00002 401 MobiDBLite consensus disorder prediction 32 59 - -
Gabi466g00002 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 191 IPR013087 -
Gabi466g00002 401 MobiDBLite consensus disorder prediction 44 59 - -
Gabi466g00002 401 Gene3D - 186 400 - -
Gabi466g00002 401 SUPERFAMILY ADP-ribosylation 188 400 - -
Gabi466g00002 401 ProSitePatterns Zinc finger C2H2 type domain signature. 165 186 IPR013087 -
Gabi466g00002 401 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 66 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi466g00002 Gabi-Chr466 75572 77477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi466g00002 97 401 C2H2 Transcription Factor Family AT2G29660 58.805 1.31e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi466g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi466g00002 - - gmx:100785244 570.852