Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4668g00003 ATGGAACCTCGCGTTGGGAATAAATTTCGGCTTGGCCGGAAGATCGGTAGCGGCTCGTTTGGGGAGATCTATTTAGGTACTAATATTCAAACTAATGAAGACGTTGCGATTAAGCTAGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTACGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGGGTGGAGGGAGATTACAATGTTCTAGTGATGGACCTGCTGGGACCTAGTCTTGAAGATTTATTTAACTTTTGTAATAGAAAGCTGTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAATCGTGTTGAGTTTGTTCATTCAAAATCATTTCTACATAGGGATATCAAACCAGATAATTTCCTCATGGGCTTGGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTTGGCTTGGCGAAAAAATATAGAGATAGCTCAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCGAGATATGCTAGCATGAATACCCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTAGAGTCTCTTGGTTATGTCTTGATGTACTTCCTCAGAGGAAGCCTCCCTTGGCAAGGACTTAAAGCAGGAACCAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAGGTTTCTACCTCAATTGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCGTCTTACTTTCATTACTGCCGCTCATTAAGGTTTGATGACAGGCCAGATTATGCTTACCTCAAAAGAATATTCCGTGACCTATTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACCATCTTGAAATATCAGCAATCACAGCTAGCTACTCGTCCAACGCGTGCCTTTGGTCCTAGTGCTGGAACTAGTTCTGGAATGCTGCCGCCTATGACTAATGATGATAGACAGACAGGTAGGGAAGAAGGGCGACCTCCTGGTCTGGTTTCAGTGGATTCCTCAAGGAGAAGAATGTCAGGGCCCATTTTAAATTCTGTAAATATTTCAAAGCAGAAAAATCCAGTCACCAGTGATTCTGCTGTTGATAAGGAAGCTATGTTATCAAGTGCCAATATCTTGGGCCAGTCAAGTGGATCATCAAGGCGAGTTGCTGTTTCTAGTAGCCGAGATGCATTTGTTGATTCGGATCTTCGTACTCGTACTACCGATGCTAGCCCTGTAGCAGCCCACAGAATTTCAAGTGGGCAAAGAAGTTCACCAGTTGGATCTTCAGATCCCAAGAGAGGAGTATCATCTGGGAGAAATGCTTCTCATGTCAAGAATTATGAAACTACAGTCAAGGGCATTGAGGGTTTGCAATTAGAAAATGATGAGAGGGCCCATTATTAA 1422 0.4226 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEDVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATRPTRAFGPSAGTSSGMLPPMTNDDRQTGREEGRPPGLVSVDSSRRRMSGPILNSVNISKQKNPVTSDSAVDKEAMLSSANILGQSSGSSRRVAVSSSRDAFVDSDLRTRTTDASPVAAHRISSGQRSSPVGSSDPKRGVSSGRNASHVKNYETTVKGIEGLQLENDERAHY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4668g00003 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gabi4668g00003 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi4668g00003 473 PANTHER CASEIN KINASE-RELATED 9 385 - -
Gabi4668g00003 473 CDD STKc_CK1_delta_epsilon 8 282 - -
Gabi4668g00003 473 MobiDBLite consensus disorder prediction 348 371 - -
Gabi4668g00003 473 MobiDBLite consensus disorder prediction 409 453 - -
Gabi4668g00003 473 FunFam Putative Casein kinase I 1 85 - -
Gabi4668g00003 473 MobiDBLite consensus disorder prediction 304 323 - -
Gabi4668g00003 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4668g00003 473 MobiDBLite consensus disorder prediction 407 473 - -
Gabi4668g00003 473 FunFam Casein kinase I isoform delta-like 1 308 - -
Gabi4668g00003 473 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4668g00003 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi4668g00003 473 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4668g00003 473 MobiDBLite consensus disorder prediction 304 371 - -
Gabi4668g00003 473 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4668g00003 Gabi-Chr4668 8690 18923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4668g00003 7 223 EF-hand Containing Proteins AT2G17890 26.222 3.17e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi4668g00003 Pkinase 3.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4668g00003 K02218 - gmx:100785851 810.446