Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4665g00001 ATGGCAGAACCATCCACCGCCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCGGCGCCGGCTTCCTCGTCGCTCAACGTCGTCGGATTAACGAGCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCTTACACGTCAGCTACCACCTTCGAAGAATTGAATCTCTCACCGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCAGAAACCTAGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGATCGTACACGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACACGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGGGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGAATTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTAAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAATTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTGAATGACATTGTCCAGAATTTTGTTTCGAGGACAGTTAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGTCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAGTGAAAAAAGAATACATACTCGAAATAGAAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTCCTGTTGTCGCTCCCGTCACCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCTGGTCTGCAGCGGACATTCTTGCCGAGGAGCTTGCTAGGAGGACTGGCGGCCCGGTTATTAAGGATGTGCAGGAGAATGCCCAGAGTCGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACAGCTTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAA 1269 0.461 MAEPSTAETTSASDAHPPAPAPASSSLNVVGLTSDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSPELLKGLYVEMKFQKPSKIQAVTLPMILNPPNRDLIVHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYTGISSECAIPADSRDALPIAKRAPIMAQVVIGTPGTINKWMNYKKLGVTRLKILVFDEADQMLAKDGFKDDSLRIMKGIEKFNSNCQVLLFSATLNDIVQNFVSRTVKQDYNTLFVKELSLDVVKQYKVHCPDELSKIEVKKEYILEIEENLGQTIIFVRTRNSAKMLHKSLVVAPVVAPVTPSKGVDKGKRKVVNIVKRKVWSAADILAEELARRTGGPVIKDVQENAQSRRSTLLHLKLFLLNQQLLEGRGLLARI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4665g00001 422 SMART ultradead3 87 294 IPR014001 -
Gabi4665g00001 422 PANTHER RNA HELICASE 49 338 - -
Gabi4665g00001 422 MobiDBLite consensus disorder prediction 1 64 - -
Gabi4665g00001 422 CDD DEADc_DDX19_DDX25 74 273 - -
Gabi4665g00001 422 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 277 IPR014001 -
Gabi4665g00001 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 272 IPR027417 -
Gabi4665g00001 422 Gene3D - 46 281 IPR027417 -
Gabi4665g00001 422 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 96 IPR014014 GO:0003724
Gabi4665g00001 422 Pfam DEAD/DEAH box helicase 93 264 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4665g00001 Gabi-Chr4665 13 4157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4665g00001 29 332 Eukaryotic Initiation Factors Gene Family AT1G72730 31.875 2.98e-33 127