Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4662g00005 ATGCATATTCAAAATATGAATCCTGTGAAGGAAGAGTTTCAGGGAGAAAGTTGTTCCTTCTCTGGTGATATCCAACCTGTGATTGTTCCCCAACCAATGGAGGGTCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAAACATATGACATTATTGATGATGCTTCCACAAATGAGATAGTTTCATGGAGCAAGGGAAACAACAGTTTCATTGTGTGGGATCCTCAAGCATTTTCCATCACTCTTCTTCCCAAATACTTCAAGCACAAGAACTTCTCTAGCTTTGTTAGGCAGCTTAACACCTATGGGTTTAGAAAAGTAGATCCTGATAAGTGGGAGTTTGCTAATGAAGAGTTTCTTAGAGGACAAAGGCATCTTTTGAAGAATATTAGGAGGAGGAAGACAACTCATCCTCAGCCTTCACAGCAAGCTATGGACCATTGTGTTGAAGTGGGGCGGTTTGGATTTGATGGAGAAATTGATCGGTTGAGGCGTGACAAGCAAGTTCTCATGGTGGAGCTGGTGAAACTTAGACAACAACAGCAGAATACTATAAGTTACCTTCAATTAACTGAAAGTAGGCTTAAAAAGACTGAGCAGAAACAGAAACAGATGATGAACTTTTTGGCAAGGGCAATGCAGAATCCTAACTTTGTGCAGCAATTAGTTCAACAAAAGGAATTGAGAAAGGAGCTGGAGGAATATTTTTTCAAGAAGAAAAGAGGACAACCAATTGATCAAGGGCCTAGTAATATTGAGGTAACTGAATTAGTTCATGCTGAAGAGTACTCAGCTTTAGTTAAACTTGAACAGCAGGACCCTGCTATGAATATGGGGGAACAAAGTGGAACCCAAAAGAGCATAGAGGAGAAAGGAGTTGAACTTGAAAGTAATAATAAAGACATTGACAAAGTATTATGGGAAGAATTTTTGAATGAAGGTATGGAAGACAATCTAGTAGGATTTAAAGAAGATGATGAATATATAAATGTGTTGGTTGAGGAACTTGGGTATTTAGCCTCAAGTTCTGAATAA 1035 0.3894 MHIQNMNPVKEEFQGESCSFSGDIQPVIVPQPMEGLHESGPPPFLTKTYDIIDDASTNEIVSWSKGNNSFIVWDPQAFSITLLPKYFKHKNFSSFVRQLNTYGFRKVDPDKWEFANEEFLRGQRHLLKNIRRRKTTHPQPSQQAMDHCVEVGRFGFDGEIDRLRRDKQVLMVELVKLRQQQQNTISYLQLTESRLKKTEQKQKQMMNFLARAMQNPNFVQQLVQQKELRKELEEYFFKKKRGQPIDQGPSNIEVTELVHAEEYSALVKLEQQDPAMNMGEQSGTQKSIEEKGVELESNNKDIDKVLWEEFLNEGMEDNLVGFKEDDEYINVLVEELGYLASSSE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4662g00005 344 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4662g00005 344 Coils Coil 160 180 - -
Gabi4662g00005 344 FunFam Heat shock transcription factor 1 37 134 - -
Gabi4662g00005 344 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4662g00005 344 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4662g00005 344 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4662g00005 344 Gene3D - 36 135 IPR036388 -
Gabi4662g00005 344 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4662g00005 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 269 IPR027725 -
Gabi4662g00005 344 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4662g00005 344 SUPERFAMILY "Winged helix" DNA-binding domain 39 133 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4662g00005 Gabi-Chr4662 32032 34175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4662g00005 23 343 HSF AT3G22830 54.768 2.90e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi4662g00005 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4662g00005 K09419 - gmx:100809515 431.795