Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4658g00009 ATGGCTGCCGTAACGCCTCTTATTCTTCTTACACTTGTCTTTCTTCAAGTTTTGTTAGTTTTTGCAAACGTTTATCTGAGTTCAACACTTACCACTCATGATAATGATGCGTGGCTATCACCTTTGGGTGATTTTGCTTTCGGGTTTCGCCAACTTAACGACACAAGTACAAACCTCTTCATGGTTTCCATCTGGTATAACAAAATACCCGACCGGACCGTTGTTTGGAATGCAAAAGCAGATGATGATGTTGTAAAAGCACCAACAGGATCACAGATTCAGCTCACATCAAAAGGGCTCACGCTCACAAGTCCTAACGGGAAATCCATATGGACGGCACAACCAAACGCCCTTGTTTCCCACGGAGCTATGCTTGACACTGGCAACTTTGTTCTCTTGAACAACAATTCTACTAATGTGTGGGAAAGTTTCAAGAATCCCACAGACACGTTGTTGCCTAACCAATCTCTGGAGCAAGATGGCAAGCTAACTTCTCGATTCACAGAGACCAATTACACAAGAGGAAGGTTCCAACTTTATTTTCAGGATGGTGATGTCTTTCTGAGCCCCCTTGCTTGGCCTACTGATTTTCGTTATGACTCTTATTATAAAATTGATGCTGCTGCCTCTGCTTCACGATTAGTATTCAATGAATCGGGGGATATTTATGTAGAGACAACAAATGGGACTAGAATACAACCTCAAGGTCAACAATGGGATAACATAACTCTCGATCCTAAGGTGTACTACTACAGAGCGACACTTGATTTCCATGGAGTTTTCACCCATTATGCTTATCCAAGGAGCTCCAGTGCCCAACAAGGCTGGACAATTTTGAGGTATGTTCCTTATAATATATGCATTGCAATACTTAATGACATGGGTAGCGGTTGCTGTGGCTATAATAGCTATTGCTCCAAGGAAAATCAGAGGCCTACTTGCAATTGTCCTGATGGGTATTCGCTAATAGATCCTAGTAATCAATTTGGTGGATGCCAACCCAATTTCACCCTTGGTTGTGGGGCAGATAATGATGGAGGATCGCAAGCACAGCCAGAAGAGCTATATAATATTACTATTCTTAGATACGTGGATTGGCCTCTATCAGATTATGAAAAGTTACAACCCTCCTCTCAACAGGACTGCCAACAATCTTGCTTGATTGATTGCATGTGTGCTGTTGCCATTTTTAGGGATGAAACATGTTGGAAGAAAAGATTACCTCTCTCTAATGGAAGATCAAACAGTGGCAGTCACTTGGTCCTTATGAAAACAAGAATTGCTCCTTTGGGTAACCTTGGTCCTGCCAATAGTCCTAACCCAAAGAAAGAAGATCGAGCTAAGCCAGTTCTAGGTTTACTTATTGGCTCCGTTGTCATCAACAGTCTACTCCTGGCTACTGTTGTTTTGATTCTTCTCTTGAAGCCCAGAAGGATTGTCCAAGCTTCAAGTAATTTGGAATCAAATTTACATTCATTTACTTATGAAGCATTGAAAGAAGCCACGTGGGATTTTAAGGAAGAACTAGGCAGGGGTTCCTTTGGCATTGTTTACAAAGGCAAACTAGAAGCGGCGTCTTACAATGTGGTTGCCGTCAAGAAATTGGACAGATTGGCACAAGAACAAGAGAAGGAATTTAAGACCGAGTTAAGTGCTATTGGTAAAACCTGCCACAAAAATCTGGTACGGTTGATTGGATTTTGTGACGAGGGACTCCATAGGCTAATTGTCTACGAGTTTATGGGCAATGGTTCTCTTGCAAATATCCTATTTGGACAACCCAAACCCATTTGGAATCTAAGGGTTAGGTTTGCTTTGGATACTGCAAGAGGGTTGGTGTACTTACACGAAGAGTGTGACACTCCCATCATTCATTGCGATATTAAACCTCAAAATATACTCATAGATGAACGTTTCACTGCAAAGATCTCTGACTTTGGGTTGGCCAAGTTGTTGTTGTCTGACCAAAGTAGAACCAATACCATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTAACGGTTAAAGTGGATGTTTACAGCTTTGGTGTCATGTTGTTGGAAATCATTTGCTGCAGAAAAAGTGTGCAGCTAATGGACTCCGAGGAGGAAGAGAGAGCAATATTAACAGATTGGGCTTATGATTGCTATATAGAAAAGAGAATAGATGCTCTGGTGGAGAACGATCATGAGGCGTTGGCTGACATTGGCAGGTTACAGAATTGGGTAAAGATAGCAATCTGGTGCATTCAAGAGCATCATGAAATGAGGCCAACAATGGGAAAGGTCATGCAAATGCTTCAAGGTTCGGTTGAAGTTCCTAACCCACCATGGCCGTCTTCCTTCACTTCAATTTCTTGA 2382 0.4211 MAAVTPLILLTLVFLQVLLVFANVYLSSTLTTHDNDAWLSPLGDFAFGFRQLNDTSTNLFMVSIWYNKIPDRTVVWNAKADDDVVKAPTGSQIQLTSKGLTLTSPNGKSIWTAQPNALVSHGAMLDTGNFVLLNNNSTNVWESFKNPTDTLLPNQSLEQDGKLTSRFTETNYTRGRFQLYFQDGDVFLSPLAWPTDFRYDSYYKIDAAASASRLVFNESGDIYVETTNGTRIQPQGQQWDNITLDPKVYYYRATLDFHGVFTHYAYPRSSSAQQGWTILRYVPYNICIAILNDMGSGCCGYNSYCSKENQRPTCNCPDGYSLIDPSNQFGGCQPNFTLGCGADNDGGSQAQPEELYNITILRYVDWPLSDYEKLQPSSQQDCQQSCLIDCMCAVAIFRDETCWKKRLPLSNGRSNSGSHLVLMKTRIAPLGNLGPANSPNPKKEDRAKPVLGLLIGSVVINSLLLATVVLILLLKPRRIVQASSNLESNLHSFTYEALKEATWDFKEELGRGSFGIVYKGKLEAASYNVVAVKKLDRLAQEQEKEFKTELSAIGKTCHKNLVRLIGFCDEGLHRLIVYEFMGNGSLANILFGQPKPIWNLRVRFALDTARGLVYLHEECDTPIIHCDIKPQNILIDERFTAKISDFGLAKLLLSDQSRTNTMIRGTRGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRKSVQLMDSEEEERAILTDWAYDCYIEKRIDALVENDHEALADIGRLQNWVKIAIWCIQEHHEMRPTMGKVMQMLQGSVEVPNPPWPSSFTSIS 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4658g00009 793 SMART serkin_6 503 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4658g00009 793 FunFam S-receptor-like serine/threonine-protein kinase 475 580 - -
Gabi4658g00009 793 Pfam D-mannose binding lectin 73 161 IPR001480 -
Gabi4658g00009 793 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Gabi4658g00009 793 FunFam Serine/threonine-protein kinase 148 290 - -
Gabi4658g00009 793 Gene3D Phosphorylase Kinase; domain 1 473 580 - -
Gabi4658g00009 793 Gene3D Transferase(Phosphotransferase) domain 1 581 780 - -
Gabi4658g00009 793 CDD STKc_IRAK 509 776 - -
Gabi4658g00009 793 Gene3D - 22 145 IPR036426 -
Gabi4658g00009 793 ProSitePatterns Protein kinases ATP-binding region signature. 509 534 IPR017441 GO:0005524
Gabi4658g00009 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 186 IPR036426 -
Gabi4658g00009 793 PIRSF SRK 1 793 IPR024171 GO:0004674
Gabi4658g00009 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 782 - -
Gabi4658g00009 793 SMART blect_4 29 147 IPR001480 -
Gabi4658g00009 793 Gene3D - 146 273 IPR036426 -
Gabi4658g00009 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 145 - -
Gabi4658g00009 793 ProSiteProfiles Protein kinase domain profile. 503 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4658g00009 793 SUPERFAMILY Protein kinase-like (PK-like) 487 774 IPR011009 -
Gabi4658g00009 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Gabi4658g00009 793 Pfam Protein kinase domain 505 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4658g00009 793 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 29 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4658g00009 Gabi-Chr4658 76350 78841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4658g00009 436 780 Receptor kinase-like Gene Family AT1G56120 38.352 4.54e-66 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4658g00009 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4658g00009 - - lja:Lj2g3v1989170.1 1158.67