Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00087 ATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTATTGGGACTACGAGTCTCTCACTGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGAAAAATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAACATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTAGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTCCGCCTGATAGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTCAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACTTGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACCGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 903 0.4097 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00087 300 FunFam Casein kinase II subunit alpha 38 77 - -
Gabi4655g00087 300 Gene3D Transferase(Phosphotransferase) domain 1 78 286 - -
Gabi4655g00087 300 FunFam Casein kinase II subunit alpha 78 289 - -
Gabi4655g00087 300 PANTHER CASEIN KINASE II SUBUNIT ALPHA 39 296 IPR045216 GO:0004674|GO:0006468
Gabi4655g00087 300 CDD STKc_CK2_alpha 15 286 IPR045216 GO:0004674|GO:0006468
Gabi4655g00087 300 SMART serkin_6 1 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4655g00087 300 ProSiteProfiles Protein kinase domain profile. 1 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4655g00087 300 Gene3D Phosphorylase Kinase; domain 1 38 77 - -
Gabi4655g00087 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Gabi4655g00087 300 SUPERFAMILY Protein kinase-like (PK-like) 33 290 IPR011009 -
Gabi4655g00087 300 Pfam Protein kinase domain 38 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00087 Gabi-Chr4655 801995 812396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00087 31 286 Core Cell Cycle Gene Families AT1G20930 30.075 4.74e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Gabi4655g00087 Pkinase 1.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00087 K03097 - gmx:100819679 605.905