Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00081 ATGGTGGTGTTGGAGCTTGACGACCTGAGGGGTCATAAGTTGGAGTGCACTTTGTGGGAGCATTATGTGGATGAGGTCCAATCTTTTTTGGCAGACAACGACGATCCTCATAACGTCCTGATAGTCCAACTGGGAAGGATTAAGTGTTTTAGAGGTAAGGTCGGGATAACAAATACAAAATATACAACAAGGATTGTAATGGATTCAAAACTGAATGAGATTGTTGAGTTCAAAAAACGTCTCTCGATTGATGGTGTGGAAAGTAGTACAAGGATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAAAAGTCTATCAGTGATGTGAAACTTTGTGTTGAGGTAACTACCTGCATCACATACGGGACTATAAAGGCAATTGAGAGCAAATACAACTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGGATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTCTGTTTGATCGCGACTGTGTGTCTTTGTTGGGAATGAGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGAAAAGTCAATGTTGTTCAAGATAAATGTTAAGCAAAAGGATTTGAACACAAATAGTGAGCCCAAATATCAAGTTTCCAAAATTTGTATCAGCGAAGACATAATCTCAGCGTTCATTAAGTCTCTTATAGATCCAAATGATGAAGCAAATTTCGATAATGCACGCGAAAATGAAGTTGTTTCGTCGGAACTGGAAAAGGCTGCGTGGAATCAGACAAGGGCGGAGTCTAGACTGTCAATTTTTGAGTCTTGGATGGATGCAAATAAAAAATATCCAGAAGGTAGACATCTAACTTATGGAGAGTACCCGACTGAATTTGTTTTCAAAGAAAAAACGCATGAATGGAATCCGAGAAAAAAAGGATTTTCCATTGGAAGGATAAATCGTTTTTCTGCCAATAATGGAGAAGATTCATATCTTCGCACCTTGCTTAATTTTCAAAGAGGTTGCACCAGTTATGAAGATCTTAGAACGATCAATGGTGTGGTTTTTCCTACATTTAAGGATGCGTGCTATTCTTTAGGACTTCTGGATGATGACAATGAGTACATTGATGCAATTAAGGAGGCAAGTTCCTGGGGATCTGCTGCTTATCTTAGATGTCTGTTTGCTCTGTTGTTATTTGCCAACTCAATGAACAGACCTGAAATAGTTTGGGAAGAGTGTTGGAAATTTTTATCCGACGACGTTGTTTATCGGCATAGGAAAAGAATAGGACGCCAAGATGCAATTCTTACAGAAGAGTCTATAAAAAACATAACTCTTGAAGAAATTGATAAAGTACTGCAGAGCAATGGGAAATGCCTCTCTGATTATCCGTCAATGCCACGCATCAATAGTGAAACTTTGCTTGATATGCAAAATCGATTAGTGTTGGATGAATTAATGTATGACAGATTTGCTTTGGAAGAGGAGCATAAAAGACTAATTAATTCCCTCACTGATGAGCAGAAAGCTGTTTATGATAAAATTGTTTCAGCAGTTACGGCAGGTAATGGAGGGTTATTTTTCCTATACGGGTTCGGTGGTACAGGAAAAACATTTATTTGGAATACTCTTTTAGCATCTATTAGATCAAAAGCTGGAGTCGTACTTAATGTTGCTTCTAGCGGAATTGCTTCCCTTCTGCTTCATGGAGGACGAACAGCGCATTCTAGATTTCGTATTCCTATTCAAATAAATGAAGATTCAAGGTGTAATATAAGGCCGAAATCTACTATAGCTGAGTTGCTGTCAAAAACAAAGTTAATCATTTGGGATGAAGCTCCAATGGTACATAGATTTTGCTTTGAGGCTCTGGATAGGACACTAAGAGATTTTCTTAGAATTTCTGATACAAGCTGTGTTGATATGCCATTTGGTGGAAAAGTTGTTGTTCTAGGAGGTGACTTTCGGCAAATATTATTTGTCATTCCTCATGGCAGCAGACAAGATATAGTTCATGCAACCATCAATTCTTCTCATCTATGGTCCCATTGTCATTTATTAACTTTGACCAAGAACATGCGTCTTAATTCTGGAAGTAGCGCTCACAATTTAGAGGAAATAAAAGAATTTTCTGAGTGGCTACTTAAAGTTGGGGATGGTAATCTTGGAGATGATGTTGATGGAGAATCTATTATAACAATTCCAGATGAATTGTTGATTAGAGAATCGGAAGATCCGCTGTCGGATATGGTTAATTTTGTTTATCCGAATCTCTTGGATAATATTTTGGATCAGACCTTCTTTAAAAAACGTGCTATTCTAACTCCTAAATTGTCCGATGTTGCTATGTTAAACGAGCACCTAATGTCTATGATTCCTGGTGAAGAAATGACTTTTTTGAGTTCAGATAAAATTCTTAAGCAAGGTGGGACTTCCTCTGTTGAGGATGATGAAATCACCCCTGAGATCTTAAATACATTATCATGCTCAGGGATTCCTGATAATAAATTAATCTTGAAAGTTAAAGTTCCAGTAATGCTATTAAGAAATATTGATCAGTCGAGAGGTTTATGCAATGGCACGAGATTGCTTATTACAAAATTAGGGAATCATGTTGTTGAGGCAATTGTACTTACAGGAAGCAATATAGGGGAAACTGTGTTAATCCCTAGAATGACGATGAGCCCATCGAGTCATACATTTCCTGTAAATTTCCAAAGAAGACAATTCCCCCTGATTGTATCGTTTGCCATGACTATCAACAAGAGTCAAGGACAATCACTTTCACATGTTGCAATTTATCTCCCTAAGCCTGTCTTCACTCATGGGCAATTATATGTGGCACTGTCTAGAGTAAAGAGTAAGCATAGATTGAAGATATTGATACTAGATGAAAATGGCTGCATTACGAATAGTACCCTTAATATAGTTTACAAGGAAGTATTTCAAATACTGCTATAG 3087 0.3758 MVVLELDDLRGHKLECTLWEHYVDEVQSFLADNDDPHNVLIVQLGRIKCFRGKVGITNTKYTTRIVMDSKLNEIVEFKKRLSIDGVESSTRMTQLSTQSSYSFENDFLKETEKKSISDVKLCVEVTTCITYGTIKAIESKYNWWYKSCKKCPFSVYEDFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSASFILFDRDCVSLLGMSAAELRELHFKRGADLDQFPNELNVLNEKSMLFKINVKQKDLNTNSEPKYQVSKICISEDIISAFIKSLIDPNDEANFDNARENEVVSSELEKAAWNQTRAESRLSIFESWMDANKKYPEGRHLTYGEYPTEFVFKEKTHEWNPRKKGFSIGRINRFSANNGEDSYLRTLLNFQRGCTSYEDLRTINGVVFPTFKDACYSLGLLDDDNEYIDAIKEASSWGSAAYLRCLFALLLFANSMNRPEIVWEECWKFLSDDVVYRHRKRIGRQDAILTEESIKNITLEEIDKVLQSNGKCLSDYPSMPRINSETLLDMQNRLVLDELMYDRFALEEEHKRLINSLTDEQKAVYDKIVSAVTAGNGGLFFLYGFGGTGKTFIWNTLLASIRSKAGVVLNVASSGIASLLLHGGRTAHSRFRIPIQINEDSRCNIRPKSTIAELLSKTKLIIWDEAPMVHRFCFEALDRTLRDFLRISDTSCVDMPFGGKVVVLGGDFRQILFVIPHGSRQDIVHATINSSHLWSHCHLLTLTKNMRLNSGSSAHNLEEIKEFSEWLLKVGDGNLGDDVDGESIITIPDELLIRESEDPLSDMVNFVYPNLLDNILDQTFFKKRAILTPKLSDVAMLNEHLMSMIPGEEMTFLSSDKILKQGGTSSVEDDEITPEILNTLSCSGIPDNKLILKVKVPVMLLRNIDQSRGLCNGTRLLITKLGNHVVEAIVLTGSNIGETVLIPRMTMSPSSHTFPVNFQRRQFPLIVSFAMTINKSQGQSLSHVAIYLPKPVFTHGQLYVALSRVKSKHRLKILILDENGCITNSTLNIVYKEVFQILL 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00081 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 736 IPR027417 -
Gabi4655g00081 1028 CDD RPA1_DBD_B_like 1 81 - -
Gabi4655g00081 1028 CDD SF1_C_RecD 955 1000 - -
Gabi4655g00081 1028 SUPERFAMILY Nucleic acid-binding proteins 126 262 IPR012340 -
Gabi4655g00081 1028 Gene3D - 1 91 IPR012340 -
Gabi4655g00081 1028 Gene3D - 542 730 IPR027417 -
Gabi4655g00081 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 1027 IPR027417 -
Gabi4655g00081 1028 Gene3D - 93 268 IPR012340 -
Gabi4655g00081 1028 PANTHER UNCHARACTERIZED 302 1006 - -
Gabi4655g00081 1028 Gene3D - 947 1007 IPR027417 -
Gabi4655g00081 1028 CDD RPA1_DBD_C 128 277 IPR047192 -
Gabi4655g00081 1028 Pfam Replication factor-A C terminal domain 130 261 IPR013955 -
Gabi4655g00081 1028 Pfam PIF1-like helicase 546 910 IPR010285 GO:0000723|GO:0003678|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00081 Gabi-Chr4655 710139 716944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00081 4 261 Core DNA Replication Machinery Family AT5G08020 23.970 4.02e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00081 - - egt:105961772 848.966