Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00062 ATGATTCTTCACTCGTTTGTGTCAAATTCAACCCTTGGGTTTCTCTCTTTATTATCTCTTTCTAACTGTTCAAATTCTAAGTTAGATTCCAATTCTTGTGAACCATCTCAAATCGATGCAAATGTAAATGTACGTGAATGTTGTCTTGTTCTGTTTCGATTTAGATCCAGATTCATGGGGATTTGCTTCAGCATTGAAGAACAAAAGCACGTCTCCGTCTCTGATTCAAATTCAAAGCATAATAAATCTTCAGGATTAGTAGGACATGAATCTGGTGCATCAACAACTCCATTAGGTTCAAGTTCGATGAATATCAAAGATCTCCGCCAAAGTGCTGTACACAGCAATGTTGATATTTTTACGTATGAGGAGCTGAGGCTAGCTACCAAACACTTTCGTCCCGATTTCATTTTGGGAGAGGGTGGCTTTGGAGTTGTGTATAAAGGAGTCATAGATGATAGTGTCAGGTCAGGTTACAATTCCACTGAAGTTGCCATTAAGGAGCTAAATCGCGAAGGCTTTCAAGGCGATAGGGAATGGCTCGCTGAAGTTAATTATTTAGGTCAATTCAGTCACCCGAATCTTGTGAAGCTCATTGGATACTGCTGCGAGGATGATTACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAAAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCCATCATATATCGTGACTTCAAGACGTCAAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTTGGCCTTGCGAAGGATGGACCGATGGGGGATCAAACCCATGTTTCAACACGAGTAATGGGTACATATGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGCGATGTATATGGTTTTGGGGTGGTGCTACTTGAATTGCTTATTGGTAGGAGAGCATTAGACAAAAGCAGGCCCAGCCGAGAGCACAACTTAGTTGAGTGGGCACGCCCTTTATTGAATCATAATAAAAAACTACTGAAAATTTTAGACCCAAAAATAGAAGGGCAATATTCAACTAAAAGTGCAATAAAGGTAGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCAAAAGGCAGACCTCTCATGAGTCAGGTTGTTGAAATTCTCGAAAACTTTCAGTCAAAGGGGGAAAATGAGGAAGAACAAGTGTTTCAAAGTGGCCGTAGCAGCATAACCATTTATGAGGTTCCAAGGGGCAACAATGACACTACAACTGAGGGCTAA 1344 0.4137 MILHSFVSNSTLGFLSLLSLSNCSNSKLDSNSCEPSQIDANVNVRECCLVLFRFRSRFMGICFSIEEQKHVSVSDSNSKHNKSSGLVGHESGASTTPLGSSSMNIKDLRQSAVHSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDDSVRSGYNSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDDYRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKIEGQYSTKSAIKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGENEEEQVFQSGRSSITIYEVPRGNNDTTTEG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00062 447 Pfam Protein tyrosine and serine/threonine kinase 138 409 IPR001245 GO:0004672|GO:0006468
Gabi4655g00062 447 PANTHER OS01G0588500 PROTEIN-RELATED 81 413 - -
Gabi4655g00062 447 MobiDBLite consensus disorder prediction 77 102 - -
Gabi4655g00062 447 ProSitePatterns Protein kinases ATP-binding region signature. 138 167 IPR017441 GO:0005524
Gabi4655g00062 447 CDD STKc_IRAK 138 412 - -
Gabi4655g00062 447 ProSiteProfiles Protein kinase domain profile. 132 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4655g00062 447 MobiDBLite consensus disorder prediction 74 102 - -
Gabi4655g00062 447 FunFam Probable serine/threonine-protein kinase PBL8 215 428 - -
Gabi4655g00062 447 SUPERFAMILY Protein kinase-like (PK-like) 111 410 IPR011009 -
Gabi4655g00062 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Gabi4655g00062 447 Gene3D Phosphorylase Kinase; domain 1 106 214 - -
Gabi4655g00062 447 Gene3D Transferase(Phosphotransferase) domain 1 215 434 - -
Gabi4655g00062 447 FunFam Serine/threonine-protein kinase BIK1 99 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00062 Gabi-Chr4655 491679 498223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00062 62 409 Glycoside Hydrolase AT3G07070 46.479 1.45e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4655g00062 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00062 - - gmx:100800465 688.723