Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00054 ATGAAGACACAGGCAGAAGGTGACGCTGCCGCAGCATCTAATCCCTGCGAAGGAGGAGGAGGAGGAGAGAAGAAGAGCATAAACGCGGAGCTGTGGCAAGCTTGTGCGGGGCCACTGTTGAACCTACCTTCAGCTGGGACTCATGTCGTTTACTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCTTCTCTGAAGAAAGATGTGGATGCCCAAGTCCCAAACTATCCCAATCTTCCCTCCAAGTTACCGTGTCTCCTTCTCAATGTCACCTTGCATGCAGATCCAGATACAGATGAAGTATATGCTCAGATGACACTTCAGCCAGTGCCTTCTTTTGATACAGATGCCTTATTAAGATCAGATCTTTCTCTCAAGTCGAGTAAGCCGCAGCCTGAGTTTTTCTGTAAACAACTGACAGCAAGTGATACGAGTACTCATGGCGGTTTCTCTGTACCCCGCCGTGCTGCCGAGAAGATTTTCCCCTCTCTTGATTACTCTATGCAACCTCCTGCTCAAGAACTTGTGGCCAGGGATTTGCATGATAATTTTTGGAAATTCCGCCATGTATATCGGGGACAACCAAAGCGTCACTTGCTTACTACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTAGCTGGAGATTCTGTTTTATTTATAAGGGATGAAAAGCAGCAGCTGCTTCTGGGTATCAGACGAGCTAACAGGCAACCCACCAATTTATCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTGGTGCAAACAATAGTCCCTTCACTGTGTTTTATAATCCTAGGGCTAGTCCCTCAGAGTTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTATAGCAACCAAATATCACCTGGCATGCGCTTCCGTATGATGTTTGTAACTGAAGACTCAGGAACCAGAAGATATATGGGTACAATTATTGCTGTCAGTGATTTGGATTCCGTGAGATGGAAAAACTCACAATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGGGGAGAGGCGAAGTAGGGTCTCAATCTGGGAAATTGAACCTGTGACTACTCCATTTTTCATCTTCCCAACTCCATTCTTCGGATCCAAGAGACCAAGGCAACCAGGAATGCTTGATGATGAGCCATCCGATTTCAATAACTTTTTCAAGAATGCAACGCCTTGGCTTGGAGATGATATGTGCAAAAATGATCCTCAAGCTCTCCCTAGCATGAGCTTAGTTCAATGGATGAGCATACAGCAAAATCCTGCTATGGCTAGCTCATTGCAACCAAATTATGCGCCTTCCATGCCTGGATCTGTTCTGCAAAAGCTTCCCGGTGCAGATATTGCCCATCAGCTGGGATTTTATACTCCACAAATCTCTCAGTCAAACAATGTATCCTTTAATGCTCAGAGGATAATTCAGACTCCCCAGCAACTTGATCACCTTCGGAAGCTACCATCCACATCTAGTGCATTGGGAACAGTCATGCAGCCCCAGCAACATTTGGGTGAATCTAGGCAGAACTTGGCAAATCAAACTCTACCACAGAGTCAAGTTCACACCCAACTTCTGAATCCCCAGAGTCTTGTCCAAACCAGCAACATTCTTCAACAGCAACAACCATCCATTCAAAACCATCAACTCCGTAGAAGTCTCTCTCAGAACCCATCACAGCAGCTTCAGCAGACTATAATGGGCCAGAATCGACAGCTAAATTTGATCCAATCCCCCATGCCTGATCATATTAATCAACCATTAGAGATGTCTGATAATCAGGTTCGGCTTCAGTTGTTACAGAAGCTTCAACAACAACAACAAACACTCTTGGCACAGCAATCTGTGTTGCAGCAGCCTACTCAACTTATTGAAATCCAAGACCAACAGAGGCAGCTTTTAGATGTAGCACACAACTCTAGGGCCCTAACTCCTGGTCAAGTGTTGGAAATTCCTCCTACACTTCAAAACTCACTCCTTGAGGCTAATTCTATCCCCCATCAGATAACATCGCCTAATAGCCAAAACAATATTCTATTGTCTAATCTATCCCAGCAACCAAAGCTTCATCAACCGCAGCCTGGCTTGCTGTCTGAAATGACTGGCCACCTTGGGCTTTCCCCTACAACTACTACCAGTCTTCTATCTGCTTCTGTTTGTAGTATGCTGACAGGAGTAGGGCAATCAGTAATTACCGATGATATTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCCAGTGCACTTCCTCCAGTGATAAGTTCCCAGATCGGTAAGAGCACAACAATAGGGGATGACGTGGCACAGTCGGCTGTCACGATCTTGAGTCCAAGTACCTTAGAAACCATGTCATCTAATACAAACTTGGGAAAAGATGCGCAGCCAAAATTTGAAGTTAAACCTTCTTTAAACATTTCCAAAAATCAGAATCAAGGGAATTTTGCTCCTCAGACATACTTGAATGGTGGTGTCCAGACAGATTATTTGGATTCATCATTTTCTGCAACTTCAGTTTACCTTTCTCAGAGTGACACTCATATGCATCAAAATAACAACCCATCATCTTACAATCCACAGTCGATGTTTTGTAGAGACTATAATCAAAATGTGGAAGTTCAGGCAGATGCTAGGAGTAATGTTCCATATGGCAATAACAACGGCCAAATGGGAATGCCACTGAATCTAGACTCTTTTCTAACCAAAGGCACAGTGGGGCTGGGGAAGGATTTGTCAAATAATTTCTCTCCAGGAGGCATGCTTGGGGACTACGAAAATAACCGAGATGCTAACCCAGAACTTTCATCTTCAATGGTTTCACAGACATTTGGAGTCCCTGATATGACCTTTAATTCAATTAATTCCACCATAAATGATAGTAGCTTCTTGAATAGGGGTCCATGGGCTCCACCACCACTACCACTACCTCCACCACCACAACAGTTTCAGCGGATGAGAACATATACCAAGGTATATAAACGGGGAGCTGTGGGAAGGTCCATAGACATAACACGCTATTCAGGTTATGAGGAACTTAAACATGACCTGGCTCGTAGGTTTGGTTTTGAGGGACAGCTGGAGGATTGGCAAAGGATAGGATGGAAACTTGTTTATGTAGATCATGAGAACGATGTCCTGCTAGTGGGAGATGACCCCTGGGAGGAGTTTGTCAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTTCCAAATCAAGCTTGTAGCAGCTCTGATGGTGGGAATACTTAA 3333 0.4455 MKTQAEGDAAAASNPCEGGGGGEKKSINAELWQACAGPLLNLPSAGTHVVYFPQGHSEQVAASLKKDVDAQVPNYPNLPSKLPCLLLNVTLHADPDTDEVYAQMTLQPVPSFDTDALLRSDLSLKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPSLDYSMQPPAQELVARDLHDNFWKFRHVYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAGANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSNQISPGMRFRMMFVTEDSGTRRYMGTIIAVSDLDSVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTTPFFIFPTPFFGSKRPRQPGMLDDEPSDFNNFFKNATPWLGDDMCKNDPQALPSMSLVQWMSIQQNPAMASSLQPNYAPSMPGSVLQKLPGADIAHQLGFYTPQISQSNNVSFNAQRIIQTPQQLDHLRKLPSTSSALGTVMQPQQHLGESRQNLANQTLPQSQVHTQLLNPQSLVQTSNILQQQQPSIQNHQLRRSLSQNPSQQLQQTIMGQNRQLNLIQSPMPDHINQPLEMSDNQVRLQLLQKLQQQQQTLLAQQSVLQQPTQLIEIQDQQRQLLDVAHNSRALTPGQVLEIPPTLQNSLLEANSIPHQITSPNSQNNILLSNLSQQPKLHQPQPGLLSEMTGHLGLSPTTTTSLLSASVCSMLTGVGQSVITDDIPSCSTSPSTNNCASALPPVISSQIGKSTTIGDDVAQSAVTILSPSTLETMSSNTNLGKDAQPKFEVKPSLNISKNQNQGNFAPQTYLNGGVQTDYLDSSFSATSVYLSQSDTHMHQNNNPSSYNPQSMFCRDYNQNVEVQADARSNVPYGNNNGQMGMPLNLDSFLTKGTVGLGKDLSNNFSPGGMLGDYENNRDANPELSSSMVSQTFGVPDMTFNSINSTINDSSFLNRGPWAPPPLPLPPPPQQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGFEGQLEDWQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00054 1110 Gene3D - 298 369 - -
Gabi4655g00054 1110 FunFam Auxin response factor 132 236 - -
Gabi4655g00054 1110 FunFam Auxin response factor 993 1087 - -
Gabi4655g00054 1110 SUPERFAMILY DNA-binding pseudobarrel domain 124 263 IPR015300 -
Gabi4655g00054 1110 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Gabi4655g00054 1110 Gene3D - 132 235 IPR015300 -
Gabi4655g00054 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 619 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi4655g00054 1110 SMART B3_2 134 236 IPR003340 GO:0003677
Gabi4655g00054 1110 ProSiteProfiles PB1 domain profile. 998 1082 IPR000270 GO:0005515
Gabi4655g00054 1110 CDD B3_DNA 133 225 IPR003340 GO:0003677
Gabi4655g00054 1110 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi4655g00054 1110 FunFam Auxin response factor 298 370 - -
Gabi4655g00054 1110 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Gabi4655g00054 1110 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4655g00054 1110 Pfam AUX/IAA family 998 1083 IPR033389 -
Gabi4655g00054 1110 Gene3D - 993 1087 - -
Gabi4655g00054 1110 SUPERFAMILY CAD & PB1 domains 1001 1076 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00054 Gabi-Chr4655 415026 422935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00054 14 483 B3 DNA Binding Superfamily AT5G20730 65.833 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi4655g00054 B3 3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00054 - - ccaj:109803454 1632.85