Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00050 ATGGAAGGCTATGGAAAGTACAAAACAATGACGGAGAAGGGAGAAAACGGAGTGATTGTCCCATCGTTTTCTTCTTCGCGCGAGGGATTCCGCGCTCATGGTGGAAAAAGCGTTTTGACAGTTGCTGCTGCTAGAAAGATGTACCAGAGAGAGAAGGTCAATGCTTCTTCATCTTCAAGTGACGACATGGATGCAACCGTTTATGGTAGGAAAAAGAAAAAACGTAAATGTCTTCAGGAGTTGTTTACAGCAGATTACGTTGTAAACAATGTTTTACGGAAGGATGGCCCTTCTCTTGGTCAGGAATTTGATTCATTTCCTTCTGGACCCAAAAAGCACACTCCTGCTTGTCAAGAGGAACTAGGGCCCACCAAAAGGAGGAAGGTTTCCAAGAGTGCAACTCGAAGTCACCCTGATTGTAATATGAAAGCACCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGAAGCTGGACGCCTTCCAGTGAGTTTTGGTTTTGCTGACCGAGAAGTTCGTCTAATCTCGAATTCCATAGCACAGAAACCGGTCTATGAGAACAACAGGTCTCGGGAAACTGTAATTATGAATGGAATTGAAAAAAATAAAATGCAGAATAAGAGAAATAAAATCCAGGATAAGAGGAAACTTTTCATGCAAAGACGAGTGGGAGAATTGAACCAATATGTGACTCAGAACCAGTCACTGGTGGAAAAATGTGAACTTGCTTTGGATAGTGCAACATATGACGAGGGAGTTGATCGTTTTTCAATGTTAATCGATGATGAAGAGCTAGAATTGAGAGAGCTACAAGAAGGAACTGATCTGCTTATGTGTTCTGATCATTTTGCTGCCTGTGGAATGCTTGGTTGCTCACTTTGTAAAGATGTGCTAGTTAAGTTCCCCCCAGATAGTGTCAAGATGAAGAAACCTATACGTTTGCAACCTTGGGACTCCTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCCTTTATACATATGCTGTAGTTGTTGATATATGTCCCTTCACTCTTGATGAGTTTGTTCAATCATTTCATGATAAGGACTCGATGCTACTTGGAAAGATTCATGTGGCTCTTCTCACACTTCTTCTATCTGACATTGAAATGGAGCTTACTGATGGGTTTTTACCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAGGAATATTCCCTGAACTTATGGAAAAGATCTCTAAATCCTCTTACTTGGATTGAAATACTCCGGCAAGTGCTGGTTGCTTCTGGATTTGGTTCAAAGCAAGGTGCCTTACGAAGAGAGGCCCTTAGCAAGGAATTGAATCTTTTTGTAAACTATGGAGTATGCCCTGGCACCTTGAAGGGTGAATTGTTTACAATCTTGTCAGAGCAAGGAAACAATGGATGCAAAGTATCTGAGCTGGCAAAGTCAAAGCAGATTATTGAATTAAACCTTGTCAGCACAACAGAGGAACTGGAGTCTTTAATATTTTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCATCTGCATATCGACTGCGTATGAGCACTGTTATGAAGGACAATGATGAATGCCAGTCAGATATGGAGGACTCTGGGAGTGTTGATGATGAACTTAACGACAGTGATACGTGTAGCAGTGGCGATGATTTTGAAACTGATTCAAGAAACTCCAATATAAGAAAATTGAAGCGTGCAAACAGTCAAAAAACAAAAAATAATATGTTGAAAGTATACACTGAAATCGACGAGAGCCATCCGGGAGAAGTGTGGTTGTTAGGACTGATGGAGAGTGAATATTCTGATTTGAACATTGAAGAAAAATTGAATGCATTGGCGGCTCTAACTGATCTTCTTTCATCTGGATCCAGCATCAGGTTGAAGGATCCAATAAAAGATACCGCCAATTGCAATTCTGGCGTCCAGTTATGTGGTTCTGGAGCAAAAATAAAGAGATCAGTAGTAAAAAAGCCGGTTCCATTTTGGAACCAGATTGGACAAATGCAATCTGCTAAAGAAGTGCCCTCAACTTCTCATCCCTGTCCAGTAGATTCCTCATCATTATTCTCAAAATTTCATAGTCATGAGGCATCCTTTGAGAATGGAAAAGGTTCAACTGATTCACACCCCATTCAGTCAGTGTTATTGGGATCTGATCGTAGGTACAATAGATATTGGCTTTTCTTGGGCCCTTGTGATGCAGATGATCCTGGCCACCGGAGGGTTTACTTTGAATCTTCCGAAGATGGTCACTGGGAGGTGATTGATACCGAAGAGGCCTTGTGTACCTTGTTGTCAGTTTTGGATGATAGAGGGAAACGGGAGGCTCTTCTTCTTGAATCTTTGGAGAGGCGGCAAACATCTCTATGCAGATCTATGTCCAGGATTAAGGTTAATAGTAATGGTATGGGGAATATGTCACATTCTGATCAATCTGAGCTGGATATGGTCACAGAAGATAGTTATTCTCCAGTATCTGATGTAGACAACCTGAACCTGACTGAGACTGCCAAGGGCTCCTTGCCATCAGCTGGGGCTGTGGTAATTGAAGCCGGAAAGAAGGGGGAGGAACAAGTGCAAAAATGGTTCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTTGACTCTCTAGCAAGATGTAGGAGTTGTCACGATCTATACTGGAGAGATGAGAGACACTGTAAAATCTGCCATATGACATTTGAGCTTGACTTTGATCTAGAAGAAAGATATGCAATTCACCTAGCCACATGCAGGGAGAAAGAAGACAGCAATACATTTCCAAATCATAAAGTCTTATCATCACGGATTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGATCAAACGACTCAGACGCACCTCAACTTTAGTGGAGCTTTTTCAGGTTCTTGCTGATTTTGTTGGTGCCATCAACGAGGACTGGTTGTTTCAATGCAAATTTCTTGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACATCATCTGCCCTTGCTTTGTGGTTAGTGAAGTTAGATGCCATAATTGCTCCCTACCTGGAAAGGGCCCATCCTCAGAAGAAGCAGGGAATCAGTAAGCATGGTCCTTGCTGA 3291 0.4123 MEGYGKYKTMTEKGENGVIVPSFSSSREGFRAHGGKSVLTVAAARKMYQREKVNASSSSSDDMDATVYGRKKKKRKCLQELFTADYVVNNVLRKDGPSLGQEFDSFPSGPKKHTPACQEELGPTKRRKVSKSATRSHPDCNMKAPVKKHGIGKGLMTVWRATNPEAGRLPVSFGFADREVRLISNSIAQKPVYENNRSRETVIMNGIEKNKMQNKRNKIQDKRKLFMQRRVGELNQYVTQNQSLVEKCELALDSATYDEGVDRFSMLIDDEELELRELQEGTDLLMCSDHFAACGMLGCSLCKDVLVKFPPDSVKMKKPIRLQPWDSSPEIVKKLFKVFHFLYTYAVVVDICPFTLDEFVQSFHDKDSMLLGKIHVALLTLLLSDIEMELTDGFLPHLNKSCNFLALLHSVESQEYSLNLWKRSLNPLTWIEILRQVLVASGFGSKQGALRREALSKELNLFVNYGVCPGTLKGELFTILSEQGNNGCKVSELAKSKQIIELNLVSTTEELESLIFSTLSSDITLFEKISSSAYRLRMSTVMKDNDECQSDMEDSGSVDDELNDSDTCSSGDDFETDSRNSNIRKLKRANSQKTKNNMLKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLLSSGSSIRLKDPIKDTANCNSGVQLCGSGAKIKRSVVKKPVPFWNQIGQMQSAKEVPSTSHPCPVDSSSLFSKFHSHEASFENGKGSTDSHPIQSVLLGSDRRYNRYWLFLGPCDADDPGHRRVYFESSEDGHWEVIDTEEALCTLLSVLDDRGKREALLLESLERRQTSLCRSMSRIKVNSNGMGNMSHSDQSELDMVTEDSYSPVSDVDNLNLTETAKGSLPSAGAVVIEAGKKGEEQVQKWFRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCRSCHDLYWRDERHCKICHMTFELDFDLEERYAIHLATCREKEDSNTFPNHKVLSSRIQSLKAAIYAIESVMPEDALVGAWRKSAHKLWIKRLRRTSTLVELFQVLADFVGAINEDWLFQCKFLDGVVEEIIASFASMPHTSSALALWLVKLDAIIAPYLERAHPQKKQGISKHGPC 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00050 1096 MobiDBLite consensus disorder prediction 99 147 - -
Gabi4655g00050 1096 Pfam DDT domain 332 385 IPR018501 -
Gabi4655g00050 1096 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 735 808 IPR028941 -
Gabi4655g00050 1096 ProSiteProfiles DDT domain profile. 329 388 IPR018501 -
Gabi4655g00050 1096 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 610 649 IPR028942 -
Gabi4655g00050 1096 SMART testlast3 329 388 IPR018501 -
Gabi4655g00050 1096 MobiDBLite consensus disorder prediction 551 571 - -
Gabi4655g00050 1096 PANTHER HOMEOBOX PROTEIN SIX 220 1083 - -
Gabi4655g00050 1096 MobiDBLite consensus disorder prediction 546 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00050 Gabi-Chr4655 379575 391012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00050 249 1085 Homeobox Transcription Factor Family AT1G28420 26.693 8.30e-74 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gabi4655g00050 WSD 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00050 - - gmx:100802783 1717.21