Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00048 ATGGCTGTATCTGTGTCACTACCACTCCATTGTTCTCCCGCCACTAACAGTCTTCGATTATCATCAAAATCCACTTCATTTACCCTCCGCCGCGTCAACCACCGCACTTGTGTCGCCAGCGGTGGCAGTCCTCTCCTCCAAGTTAATGATCTGAAGGCTAAGATCGTTGAATCCGATGTGGAAATTCTTCGCGGCGTTAACCTCACTGTGAATCAAGGTGAGGTTCACGCCATCATGGGAAAGAACGGTTCTGGAAAGAGCACTTTCGCCAAGGTTCTTGTTGGCCATCCGGATTATCAAGTTACCGGAGGTAGCGTTGTGTTCAAAGGGGAGAATTTGCTTGATATGGAACCTGAGGAAAGGTCTCTTGCGGGTCTTTTTATGAGTTTCCAGTCCCCTGTTGAGATCCCTGGTGTTTCTAATGACGAGTTTCTGGTCATGGCTTACAATGCTCGAAGAAAAAAACTTGGCCTCCCTGAGCTTGGACCACTCGAGTGCTTTTCTTACCTCATGGAGAAACTCCAACTTGTTAACATGAAGCCCGACTTTCTCAATAGGAATGTCAATGAAGGATTTAGTGGCGGTGAACGCAAACGGAATGAAATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCAATACTGGACGAAATTGATTCTGGTTTGGATGTTGATGCACTCAGAGATGTGGCAAGTGCAGTCAATCGAATTTTGACACCAGAGAATTCTTTATTGATGATCACTCATTATCGACGAATTCTGGATCTTTTAAATCCTACACATGTCCATGTTATGGACAAAGGAAAGATTACAAGGACGGGCGACTTATCTATGGTAGAAGCTATTGAGGCAGGGGGATATGAAACAGTCTCAGCTTCATGA 882 0.4569 MAVSVSLPLHCSPATNSLRLSSKSTSFTLRRVNHRTCVASGGSPLLQVNDLKAKIVESDVEILRGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYQVTGGSVVFKGENLLDMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNRILTPENSLLMITHYRRILDLLNPTHVHVMDKGKITRTGDLSMVEAIEAGGYETVSAS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00048 293 ProSitePatterns ABC transporters family signature. 192 206 IPR017871 GO:0005524|GO:0016887
Gabi4655g00048 293 Pfam ABC transporter 63 217 IPR003439 GO:0005524
Gabi4655g00048 293 Gene3D - 45 292 IPR027417 -
Gabi4655g00048 293 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 32 291 IPR010230 GO:0005524
Gabi4655g00048 293 NCBIfam Fe-S cluster assembly ATPase SufC 46 289 IPR010230 GO:0005524
Gabi4655g00048 293 SMART AAA_5 72 269 IPR003593 GO:0016887
Gabi4655g00048 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 277 IPR027417 -
Gabi4655g00048 293 CDD ABC_FeS_Assembly 46 287 IPR010230 GO:0005524
Gabi4655g00048 293 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 292 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00048 Gabi-Chr4655 374976 379192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00048 59 277 Calmodulin-binding Proteins AT2G36910 23.707 1.88e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00048 K09013 - gmx:100811883 483.026