Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00032 ATGAGTAACCAAAAGGATCGTTATGATGAAGATATGGGTTCCTCAGATGTCACCGCCGGTAAAGTGGTGGTGGTTGCAGTTAAAGCTTCCAAAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTGTTGGTTGTTAATCCGGTTCTGTTCTCAAGCAAGAGGGTATGGGGCCTTTCAAGATTTACTACTGATTGTGCCACTAGTCAATGGAGATCTCGTTTAGGAACTGCTTCAGATCAGAGAGAAGTTATTACAAATTCCTGTTCTCAATTAGTGCTTCAACTCCATGATTTTTATGATCCAGAGAAGATTAAAATCAGAGTAAAGATTCTTTCTGGTTCTTTGTATGGAGCGGTGGCTGCTGAAGCCATGAGAGTCGAGTCAAGCTGGGTTATATTGGACAAAAAATTGAAACATGAAAAGAAATACTGCATGGAGCAGCTGCATTGCAATATTGTAATCATGAAGCGATCTCGGCCAAAGATTCTACGCTTGAATTTGAATAGTTCACCAAAGATAGAACTCAACGGGGGTTGTCCATTGCCACTGGAGCCAAATTCATATACATCAAACTTAAAAGACAAATCTGAACATCTAGATATTATTAGAGGTCCAACTGTTACTCCTGCTAGTAGTCCAGAGCAAGGGTCACCACCATTGACTGCAACTGATATTGGAACATCATCGATATCAAGCTCAGATCGCGGAACTTCACCATATTTCCACTCTGATAATTATGAAAGACGAAGGAAAGGTTTTCCCTTTGTTCATGAGGGACTGACAAACCTGGAGGATATTGAATCTGACTCAGAGAGCGAAAAGCTAAGTTTATCATCCAAAAGTTCATATTTTCAGCCATGGATTGAAAATTTAATTTGTATAGATGGTGAGTTCTCAAAACATGAGGATCATATGCTAAGATCAAATGATCAGGCTTTGGTTTCTACTTATGAAGCTTTGCTTCAGAAATTCTCAAAGCTGGATCAAGATCCTGTCTTAGGAGTGCTTAATTGTAAAATTGATGTGAACTTAAGCAGAAGTGTTAGAGAAGCAATTTCACTAGCTGAAAGTGCACCTCCTGGACCTCCCCCATTGTGCTCTATTTGTCAGCACAAGGCACCAGTGTTTGGGAATCCTCCGAGATGGTTTACATTTGCTGAATTGCAACTTGCCACTGCTGGTTTTTCACAAGCAAACTTCTTAGCTGAAGGTGGTTTTGGTTCTGTACACCGTGGCGTCCTACCTGATGGGCAGGTCATCGCTGTCAAGCAGCATAAATTAGCCAGTACTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAGGTCTTAAGCTGCGCACAACATCGTAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGAAGAAGATTGCTTGTTTATGAATACATCTGCAATGGTTCTCTGGATTCTCATCTCTACGGACGAAAGCAAAGTGTACTGGAATGGCATGCACGCCAAAAAATTGCTGTTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGCATCGTGCACCGTGATATGCGACCTAACAATATCCTCCTCACTCATGATTTTGAAGCATTAGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGTGATATGGGTGTAGAAACCAGGGTGATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAGGCTGATGTGTACTCATTTGGGATAGTATTACTGGAGCTTGTTACTGGAAGGAAAGCTGTGGATATAAACAGGCCCAAGGGCCAGCAATGTCTCAGTGAATGGGCACGCCCTTTGCTCGAAGAACATGCCTTTCATAAACTAGTAGATCCGAGCATAAGGAACTCTTATGTTGATCAAGAGGTTTATGGCATGCTGCAATGTTCCTCTTTGTGCATCCGAAGGGATCCTCATTTAAGGCCTCGAATGTCTCAGGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGA 2052 0.423 MSNQKDRYDEDMGSSDVTAGKVVVVAVKASKDISRTALVWALTHVVQPGDCIKLLVVNPVLFSSKRVWGLSRFTTDCATSQWRSRLGTASDQREVITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLYGAVAAEAMRVESSWVILDKKLKHEKKYCMEQLHCNIVIMKRSRPKILRLNLNSSPKIELNGGCPLPLEPNSYTSNLKDKSEHLDIIRGPTVTPASSPEQGSPPLTATDIGTSSISSSDRGTSPYFHSDNYERRRKGFPFVHEGLTNLEDIESDSESEKLSLSSKSSYFQPWIENLICIDGEFSKHEDHMLRSNDQALVSTYEALLQKFSKLDQDPVLGVLNCKIDVNLSRSVREAISLAESAPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATAGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKQSVLEWHARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEEHAFHKLVDPSIRNSYVDQEVYGMLQCSSLCIRRDPHLRPRMSQVLRMLEGDILM 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00032 683 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 483 683 - -
Gabi4655g00032 683 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 379 482 - -
Gabi4655g00032 683 SUPERFAMILY Protein kinase-like (PK-like) 387 678 IPR011009 -
Gabi4655g00032 683 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
Gabi4655g00032 683 PANTHER OS01G0750732 PROTEIN 322 681 - -
Gabi4655g00032 683 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4655g00032 683 ProSitePatterns Tyrosine protein kinases specific active-site signature. 528 540 IPR008266 GO:0004672|GO:0006468
Gabi4655g00032 683 MobiDBLite consensus disorder prediction 220 252 - -
Gabi4655g00032 683 CDD STKc_IRAK 413 679 - -
Gabi4655g00032 683 Gene3D Transferase(Phosphotransferase) domain 1 483 681 - -
Gabi4655g00032 683 MobiDBLite consensus disorder prediction 216 257 - -
Gabi4655g00032 683 Pfam Protein tyrosine and serine/threonine kinase 411 677 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00032 Gabi-Chr4655 223777 228459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00032 357 673 Trihelix Transcription Factor Family AT1G68690 50.467 5.34e-102 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi4655g00032 PK_Tyr_Ser-Thr 7.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00032 - - aprc:113855006 1194.1