Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00031 ATGAGTAACCAAAAGGATCGTTATGATGAAGATATGGGTTCCTCAGATGTCACCGCCGGTAAAGTGGTGGTGGTTGCAGTTAAAGCTTCCAAAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTGTTGGTTGTTAATCCGGTTCTGTTCTCAAGTATTGGCAAGAGGGTATGGGGCCTTTCAAGATTTACTACTGATTGTGCCACTAGTCAATGGAGATCTCGTTTAGGAACTGCTTCAGATCAGAGAGAAGTTATTACAAATTCCTGTTCTCAATTAGTGCTTCAACTCCATGATTTTTATGATCCAGAGAAGATTAAAATCAGAGTAAAGATTCTTTCTGGTTCTTTGTATGGAGCGGTGGCTGCTGAAGCCATGAGAGTCGAGTCAAGCTGGGTTATATTGGACAAAAAATTGAAACATGAAAAGAAATACTGCATGGAGCAGCTGCATTGCAATATTGTAATCATGAAGCGATCTCGGCCAAAGATTCTACGCTTGAATTTGAATAGTTCACCAAAGATAGAACTCAACGGGGGTTGTCCATTGCCACTGGAGCCAAATTCATATACATCAAACTTAAAAGACAAATCTGAACATCTAGATATTATTAGAGGTCCAACTGTTACTCCTGCTAGTAGTCCAGAGCAAGGGTCACCACCATTGACTGCAACTGATATTGGAACATCATCGATATCAAGCTCAGATCGCGGAACTTCACCATATTTCCACTCTGATAATTATGAAAGACGAAGGAAAGGTTTTCCCTTTGTTCATGAGGGACTGACAAACCTGGAGGATATTGAATCTGACTCAGAGAGCGAAAAGCTAAGTTTATCATCCAAAAGTTCATATTTTCAGCCATGGATTGAAAATTTAATTTGTATAGATGGTGAGTTCTCAAAACATGAGGATCATATGCTAAGATCAAATGATCAGGCTTTGGTTTCTACTTATGAAGCTTTGCTTCAGAAATTCTCAAAGCTGGATCAAGATCCTGTCTTAGGAGTGCTTAATTGTAAAATTGATGTGAACTTAAGCAGAAGTGTTAGAGAAGCAATTTCACTAGCTGAAAGTGCACCTCCTGGACCTCCCCCATTGTGCTCTATTTGTCAGCACAAGGCACCAGTGTTTGGGAATCCTCCGAGATGGTTTACATTTGCTGAATTGCAACTTGCCACTGCTGGTTTTTCACAAGCAAACTTCTTAGCTGAAGGTGGTTTTGGTTCTGTACACCGTGGCGTCCTACCTGATGGGCAGGTCATCGCTGTCAAGCAGCATAAATTAGCCAGTACTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAGGTCTTAAGCTGCGCACAACATCGTAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGAAGAAGATTGCTTGTTTATGAATACATCTGCAATGGTTCTCTGGATTCTCATCTCTACGGACGAAAGCAAAGTGTACTGGAATGGCATGCACGCCAAAAAATTGCTGTTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGCATCGTGCACCGTGATATGCGACCTAACAATATCCTCCTCACTCATGATTTTGAAGCATTAGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGTGATATGGGTGTAGAAACCAGGGTGATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAGGCTGATGTGTACTCATTTGGGATAGTATTACTGGAGCTTGTTACTGGAAGGAAAGCTGTGGATATAAACAGGCCCAAGGGCCAGCAATGTCTCAGTGAATGGGCACGCCCTTTGCTCGAAGAACATGCCTTTCATAAACTAGTAGATCCGAGCATAAGGAACTCTTATGTTGATCAAGAGGTTTATGGCATGCTGCAATGTTCCTCTTTGTGCATCCGAAGGGATCCTCATTTAAGGCCTCGAATGTCTCAGGTGCTCAGGATGCTGGAAGGTGACATTCTCATGTGA 2058 0.4227 MSNQKDRYDEDMGSSDVTAGKVVVVAVKASKDISRTALVWALTHVVQPGDCIKLLVVNPVLFSSIGKRVWGLSRFTTDCATSQWRSRLGTASDQREVITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLYGAVAAEAMRVESSWVILDKKLKHEKKYCMEQLHCNIVIMKRSRPKILRLNLNSSPKIELNGGCPLPLEPNSYTSNLKDKSEHLDIIRGPTVTPASSPEQGSPPLTATDIGTSSISSSDRGTSPYFHSDNYERRRKGFPFVHEGLTNLEDIESDSESEKLSLSSKSSYFQPWIENLICIDGEFSKHEDHMLRSNDQALVSTYEALLQKFSKLDQDPVLGVLNCKIDVNLSRSVREAISLAESAPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATAGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKQSVLEWHARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEEHAFHKLVDPSIRNSYVDQEVYGMLQCSSLCIRRDPHLRPRMSQVLRMLEGDILM 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00031 685 CDD STKc_IRAK 415 681 - -
Gabi4655g00031 685 MobiDBLite consensus disorder prediction 222 254 - -
Gabi4655g00031 685 PANTHER OS01G0750732 PROTEIN 323 683 - -
Gabi4655g00031 685 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 381 484 - -
Gabi4655g00031 685 Pfam Protein tyrosine and serine/threonine kinase 413 679 IPR001245 GO:0004672|GO:0006468
Gabi4655g00031 685 Gene3D Phosphorylase Kinase; domain 1 381 484 - -
Gabi4655g00031 685 ProSiteProfiles Protein kinase domain profile. 409 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4655g00031 685 MobiDBLite consensus disorder prediction 218 259 - -
Gabi4655g00031 685 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 485 685 - -
Gabi4655g00031 685 SUPERFAMILY Protein kinase-like (PK-like) 389 680 IPR011009 -
Gabi4655g00031 685 Gene3D Transferase(Phosphotransferase) domain 1 485 683 - -
Gabi4655g00031 685 ProSitePatterns Tyrosine protein kinases specific active-site signature. 530 542 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00031 Gabi-Chr4655 223777 228459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00031 359 675 Trihelix Transcription Factor Family AT1G68690 50.467 6.60e-102 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi4655g00031 PK_Tyr_Ser-Thr 7.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00031 - - aprc:113855006 1189.87