Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00002 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAACGTGAAAAGAGGGCCATGGTCTCCTGAAGAAGATGAAACCCTCAAAAACTATCTCAAGAAACATGGCACAGGTGGTAATTGGATAGCTCTCCCACAAAAAGCAGGCCTTAAGCGCTGTGGGAAGAGTTGTCGTCTGAGATGGCTGAACTATCTAAGGCCTCATATCAAGCATGGAGGTTTCACTGAGGAGGAAGATAAAGTTATCTGCACCCTTTATGCTAACATCGGAAGCAGGTGGTCTCTTATAGCTGCTCAATTACCTGGGAGAACGGACAATGATGTGAAAAACCACTGGAACACTAAGTTGAAGAAAAAGTTTTTTGCAACAAACACCAATGCCACTGGGAACACTGGTTCTTCACAATTCTCAACTTTCACTCCTCAGCCTCAAGTTGAAGCCTTTGTCTTTGATCATAAGAACTCTGCTGATGATCACTCCCAATATGTTTTAGGTTTGGAGCAAACACCAATTACAGTTCCTTTATCAATGCCTTTGGAATCGGACGTTTCAGGTCTTGGAAGCAGCATGAGTAACACTTGTGGTATACCACTCGCCAAGGAAGTTTCAGTTCTTTCAAATTCAACTTCCTTGGCCAAGGAGAATGATATTGATACCCAATGGTTTGGGTATTATGACCATGAAGGTGAAGATGAATCAATTTTACTTGATTTTGTGTTTGAAGATCTCCTGCAAAATGGGTTTGCTTCTCAAGATAAAAGCAGCCAACTTGCCCCATCATCTGGCTAG 780 0.4256 MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTEEEDKVICTLYANIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFFATNTNATGNTGSSQFSTFTPQPQVEAFVFDHKNSADDHSQYVLGLEQTPITVPLSMPLESDVSGLGSSMSNTCGIPLAKEVSVLSNSTSLAKENDIDTQWFGYYDHEGEDESILLDFVFEDLLQNGFASQDKSSQLAPSSG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00002 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi4655g00002 259 CDD SANT 71 113 IPR001005 -
Gabi4655g00002 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi4655g00002 259 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gabi4655g00002 259 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi4655g00002 259 PANTHER OS09G0431300 PROTEIN 1 160 - -
Gabi4655g00002 259 Gene3D - 7 68 - -
Gabi4655g00002 259 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi4655g00002 259 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi4655g00002 259 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi4655g00002 259 CDD SANT 16 62 IPR001005 -
Gabi4655g00002 259 Gene3D - 70 134 - -
Gabi4655g00002 259 SMART sant 13 64 IPR001005 -
Gabi4655g00002 259 SMART sant 67 115 IPR001005 -
Gabi4655g00002 259 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00002 Gabi-Chr4655 25182 26285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00002 1 119 MYB Transcription Factor Family AT5G57620 81.513 1.30e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4655g00002 Myb_DNA-binding 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4655g00002 K09422 - gmx:778160 322.398