Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4655g00001 ATGATGCTGGGGGAGACCCACCGTGCAAATCCCACCGTCCACGTGCCTCCGTGGCCGCTTCATCACGATCCAACGCCGGAGATCTTTTCCCCTTTTGCCGCCAATACCGATTACTCTCCGTACTACTTGCAGGAAGCACTCACTGCGCTTCAGCTCTATGTTCCCTCCAACGATACCGATGCCGATTCCGACTCGGAGTTTCCGAGTCGTGAATCGGATGTTCTGATGGATGCATACTCCTGCGACCATTTTCGCATGTTCGAGTTTAAGGTCCGAAAGTGCGCACGTGGTAGGTCACATGACTGGACGGAGTGCCCTTACGCTCACTCCGGCGAGAAGGCTCGCCGTCGCGACCCGAGGAAGTACCATTATTCCGGCACCGCGTGTCCCGATTTTCGCAAGGGGAATTGCAAGAAGGGTGATGCATGTGAGTTCGCGCATGGTGTGTTCGAGTGCTGGCTCCACCCTGCGCGCTACCGTACTCAGCCATGCAAGGACGGAACCAGTTGCCGGCGAAGGGTGTGTTTCTTCGCCCACACGCCGGAGCAACTCAGGGTTCTGCCTCAGCAGAGTCCCCGGAGTGCAAACTCGGCCGATTCGTATGATGGGTCCCCTCTGAGAGCCAAGATGCTTCCCTTCATATCTTCTCCCTGTTCGGTCTCCCCGCCGGTGACGCCTCCGGCGGAGTCTCCTCCGATGTCACCGATGACTCTATCACTGAGCCGTTCTATGGGTTCGAACTCTGTCAATGTGAATGAGATGGTGGCTTCTATGCGTAATTTGCAACTGGGTAAGGTGAAATCATTACCCTCTTCCTGGAACGTTCAAATGGGGTCTCCTGGTTTTGGATCACCGAGGGGACCCGTGATCCGACCCGGATTCTGTAGCCTCCCCTCGACCCCTACACAGCCACCGGTTCGTGGTGGTGTTAACTATTTCGATCTCTGTGATCAGAGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTTGAGTCAGGAAGGGACATACGGGCGAAGATGTTTGAGAAATTGAGCAAAGAAAACTCTCTGGGAGGATCGGGTTCGGTTTCGGGTCAAATGAATGGAGCTCCGGGTGTTGGCTGGGTTTCGGAGCTGGTGAGTCCCTTCTTGGGATGA 1134 0.5573 MMLGETHRANPTVHVPPWPLHHDPTPEIFSPFAANTDYSPYYLQEALTALQLYVPSNDTDADSDSEFPSRESDVLMDAYSCDHFRMFEFKVRKCARGRSHDWTECPYAHSGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSADSYDGSPLRAKMLPFISSPCSVSPPVTPPAESPPMSPMTLSLSRSMGSNSVNVNEMVASMRNLQLGKVKSLPSSWNVQMGSPGFGSPRGPVIRPGFCSLPSTPTQPPVRGGVNYFDLCDQSCEEEPVMERVESGRDIRAKMFEKLSKENSLGGSGSVSGQMNGAPGVGWVSELVSPFLG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4655g00001 377 PANTHER UNKEMPT FAMILY MEMBER 45 372 IPR045234 -
Gabi4655g00001 377 Gene3D - 124 187 - -
Gabi4655g00001 377 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
Gabi4655g00001 377 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Gabi4655g00001 377 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Gabi4655g00001 377 FunFam Zinc finger CCCH domain-containing protein 66 81 149 - -
Gabi4655g00001 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 148 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4655g00001 Gabi-Chr4655 7761 10180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4655g00001 59 268 C2H2 Transcription Factor Family AT5G12850 49.091 1.02e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4655g00001 zf-CCCH 3.7e-06 CL0537