Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00088 ATGCCTCTTCATCCACACCATGTCCATGGTGACCATTCTCAATCTCAATCCCGACCAAAACCAAACCCCAACCTCCTTTCCCTATTCCTGAAATCTATCATCATGCTCCTTCTCACCTCTCTCTTCTTCCTCTTTCTCGGCTTCGCCGCCTTCGTCCTCCTCCACCTCTTTCTCATTGGCGGTGCCGTCCACCGCCTTCGCTCCCGCCCCGCCCCCACACGCTTCTCCGCCACCCCTTCCAACAGGTTCTCCCCTCGCGACGTTAGCAAGCTCCCCCACTTCCGGTTCTCCATGGGATCCGAACCCGAACCCGAACCCGATTCACATTGCGTTGTCTGTTTGGATGGCTTCCGTTACGGCCAGTGGTGCAGAAATCTCCCCGGATGCGGTCACGTCTTTCACCGGAGATGCATCGACACGTGGCTCGTCAAGGTCGCCGCTTGCCCTACATGCCGGACACCTGTTCGATTGAATGGTTCTCTCCTTGATGTACCAAGAGACGGTTCCACGCAATTTTGGACCTGCGAAACTAACACCAATGCTCTCACCATTTTGTAG 558 0.5556 MPLHPHHVHGDHSQSQSRPKPNPNLLSLFLKSIIMLLLTSLFFLFLGFAAFVLLHLFLIGGAVHRLRSRPAPTRFSATPSNRFSPRDVSKLPHFRFSMGSEPEPEPDSHCVVCLDGFRYGQWCRNLPGCGHVFHRRCIDTWLVKVAACPTCRTPVRLNGSLLDVPRDGSTQFWTCETNTNALTIL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00088 185 Pfam Ring finger domain 109 152 IPR001841 -
Gabi4651g00088 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 162 - -
Gabi4651g00088 185 SMART ring_2 110 151 IPR001841 -
Gabi4651g00088 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 158 IPR013083 -
Gabi4651g00088 185 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Gabi4651g00088 185 SUPERFAMILY RING/U-box 105 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00088 20 175 C3H Transcription Factor Family AT2G18670 44.231 2.58e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00088 - - pvu:PHAVU_003G150700g 202.216