Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00087 ATGGGCAAGAGTTTTCTATATTGGAACGGAGATACCTTTCTGCCTCCAGCAGAACAGCCACCATATTTTCTTTCTCAGCCAAACCCACCTTTCCCTAACACTGTTCGATCTGATAGTTTCAGTTGGAATGACAAGGCCTTAAAGGTAAGTCCAAGCATACTTCTCATCATCATAATTCTGGCTATTGTTTTCTTCATTTCTGGTTTGCTTCACCTCCTGGTGAGATTTCTGTGGAGACCTCAAAGTAGAGACCCTGATGATTTGGATAGTGTCACTGCTCTTCAAGGGCAATTGCAACAACTCTTTCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGATACCCTCCCTGTCTTCCTTTACAAAGCCATCATAGGATTAAAGAACCCATTTGATTGTGCTGTTTGTTTGTGTGAATTTGAACCAGACGACAAGCTCAGGTTGTTGCCAAAATGTAGCCATGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCATTCCACTTGTCCTCTTTGTAGAGCTAGCTTGCTCCCTGACTTCTCTTCAAACAATACTTGTTCTCCCATTGTTCTTGTTCTCGAGTCTGGGAGTGAGAGCTCGAGGGAGATTGTTCCAGAAAGAGATGCTGCTGCTGCTGTTGGAAGAACTAGTTCGGTTTTAACAACAAATTCTCGTCTCGGTTGCCGTGGAGACAGTGAATGTGGTGGATCCACCCGTATTGAACTACAAACCAAATCGGGTGATTTAGCTTCAAGTGAAAATCTTGATCCAACCGTAGCAGGGGATGCTGTGGAAAAGGTGGTCATTGTTAAGCTTGGAAAGTTCAGGAACGTGGATGGTGGCGGCGGAGAAGGAGGAGAAGGAAGTAGCACCAACAATGTAGATTCTAGAAGGTGCTTTTCTATGGGGTCCTTTGCTTATGTTATGGATGAGAGTTCTTCACTACAGGTACCTATAAGAACCCCAATAAAGAAGCAGTCAAGTAAGAAAAAGTCTGTTTTGCCTTTGACACCGGGACACAGACCTGCAATGTCAGAATGTGACTTTGAATCCAGAAGGGATTACAAATTCACAGACTTTGATGCAACTAGAGTTGAGGATGTTAATGGGGCTACAAGTACTTGCATAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTGAGGGGGAAGAAGGATCAGCCAAATGCAGTGGCAGATTCTTCTAGAAGGGCTTTCTCGTTTCGGTTCCCAGCACAGCGCAACGTTGTTGTTAATGCTAGAAGTGAGTTCGGCTATGATGAGGAAAACCAAAGCTGTTATAGTATGGATTCTCAAGCTAGAGCACCTTCTTTTGCTAGGAGAACTTTGCTTTGGCTCACGGGAAGACAGAATAAGGTTGTTCACTTGTCCTCTGATTCCAATCTCTAG 1416 0.44 MGKSFLYWNGDTFLPPAEQPPYFLSQPNPPFPNTVRSDSFSWNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQSRDPDDLDSVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPDDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSSNNTCSPIVLVLESGSESSREIVPERDAAAAVGRTSSVLTTNSRLGCRGDSECGGSTRIELQTKSGDLASSENLDPTVAGDAVEKVVIVKLGKFRNVDGGGGEGGEGSSTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSVLPLTPGHRPAMSECDFESRRDYKFTDFDATRVEDVNGATSTCIKESFSISKIWLRGKKDQPNAVADSSRRAFSFRFPAQRNVVVNARSEFGYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHLSSDSNL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00087 471 Pfam Ring finger domain 133 176 IPR001841 -
Gabi4651g00087 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 46 389 - -
Gabi4651g00087 471 SMART ring_2 134 175 IPR001841 -
Gabi4651g00087 471 SUPERFAMILY RING/U-box 113 185 - -
Gabi4651g00087 471 CDD RING-H2_EL5-like 133 176 - -
Gabi4651g00087 471 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Gabi4651g00087 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 181 IPR013083 -
Gabi4651g00087 471 FunFam RING-H2 finger protein ATL46 96 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00087 Gabi-Chr4651 753306 755326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00087 48 467 C3H Transcription Factor Family AT2G18650 49.772 4.12e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00087 - - gmx:100797283 671.774