Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00056 ATGAGCATAAAGGAAAGTCTGAATGATCCGCACGGTGTGTTGAACAACTGGGATGAATACTCGGTCGATGCTTGTAGTTGGGCCATGATTACTTGCTCTTCTGATTACCTTGTTATTGGCCTGGGAGCGCCCAGCCAATCTCTCTCCGGAACTTTGTCTGCTGCAATTGGAAATCTTACCAATCTTCAACAAGTGTTACTACAAAACAACAATATCTCAGGCAAAATTCCGTCGGAACTTGGAACCCTTCCCAAGCTTCTGACTTTAGATCTTTCCAATAATCGATTCTCTGGGGTGATTCCTTCTTCTCTGAGTCAATTGAGGAGTCTCCAATACCTGAGGCTCAACAACAATAGCTTGTCTGGACCCTTTCCCGTGTCACTGGCCAAAATTCCACAGCTTACTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCCAGGTCATTCAATATTGTGGGGAACCCAATAGTTTGTGGAAGTAGCTCCACTGAAGGTTGCTCTGGATCAGCAACCCTCATGCCCGCTTCTTTCTCTCAAGCATCATCGCAAGGAAAGCATAATTCCAAAAAACTAGCAATTGCACTTGGGATCAGCCTGAGTTGTGCTTCTGTCATGGTTCTGTTTTTTGGACTCATTTGGTATAGAAAGAAACGACAGCAAGGTGCCATCCTGTATATCAGTGATTGTAAGGAAGAGGGAATTGTTAGCTTGGGAAATCTAAAAAATTTCACTTTTAGAGAGCTGCAACATGCAACATATAATTTCAACCCCAAGAACATACTTGGTGCTGGAGGCTTTGGCAATGTTTACAGGGGGAAGCTCGGAGATGGCACAATGGTGGCAGTGAAAAGGCTGAAAGATGTGACTGGTAGTGCTGGCGAATCACAGTTCCAAACAGAATTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTATTTGGATATTGTGCTACTCCTAATGAAAAACTTCTCGTTTATCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATCTGCATGAGCAATGTGATCCAAAGATAATTCACAGAGATGTAAAAGCCGCTAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGGCACATTGCACCAGAGTATCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTTGGCATTCTGTTGTTAGAGCTCATAACTGGAATGACAGCTCTTGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAATGGGTTAGGAAAATACAGCATGAAAAGAAGGTTGCAGTATTGGTGGACAAAGAGCTAGGGAGCAACTATGATAGAATAGAGGTAGGAGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTGACAGCCCACCGCCCCAAAATGTCTGAAGTGGTCCGAATGCTTGAAGGTGATGGTCTTGCTGAGAAGTGGGCAGCGTCACATAATCATGGTAGTCATGGCATGAACCCCAGTCACAGCAACAGTAGCAACAGTTTATCCCGCGCTACCTCTGCTTCTAAACATGATGACAATATTCATGATCGTTTCAGCATGTTTGGCATGACAATGGATGATGATGACGAACAGTCATTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1818 0.4428 MSIKESLNDPHGVLNNWDEYSVDACSWAMITCSSDYLVIGLGAPSQSLSGTLSAAIGNLTNLQQVLLQNNNISGKIPSELGTLPKLLTLDLSNNRFSGVIPSSLSQLRSLQYLRLNNNSLSGPFPVSLAKIPQLTFLDLSYNNLSGPLPKFPARSFNIVGNPIVCGSSSTEGCSGSATLMPASFSQASSQGKHNSKKLAIALGISLSCASVMVLFFGLIWYRKKRQQGAILYISDCKEEGIVSLGNLKNFTFRELQHATYNFNPKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFQTELEMISLAVHRNLLRLFGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKIQHEKKVAVLVDKELGSNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWAASHNHGSHGMNPSHSNSSNSLSRATSASKHDDNIHDRFSMFGMTMDDDDEQSLDSYAMELSGPR 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00056 605 SUPERFAMILY Protein kinase-like (PK-like) 244 532 IPR011009 -
Gabi4651g00056 605 Pfam Leucine rich repeat N-terminal domain 2 33 IPR013210 -
Gabi4651g00056 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Gabi4651g00056 605 PRINTS Leucine-rich repeat signature 86 99 - -
Gabi4651g00056 605 PRINTS Leucine-rich repeat signature 131 144 - -
Gabi4651g00056 605 Gene3D Transferase(Phosphotransferase) domain 1 339 549 - -
Gabi4651g00056 605 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Gabi4651g00056 605 MobiDBLite consensus disorder prediction 547 568 - -
Gabi4651g00056 605 SMART serkin_6 262 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4651g00056 605 ProSiteProfiles Protein kinase domain profile. 262 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4651g00056 605 Gene3D Phosphorylase Kinase; domain 1 232 338 - -
Gabi4651g00056 605 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 542 - -
Gabi4651g00056 605 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 175 - -
Gabi4651g00056 605 MobiDBLite consensus disorder prediction 543 571 - -
Gabi4651g00056 605 FunFam Somatic embryogenesis receptor kinase 1 232 338 - -
Gabi4651g00056 605 Gene3D Ribonuclease Inhibitor 1 175 IPR032675 -
Gabi4651g00056 605 FunFam Somatic embryogenesis receptor-like kinase 1 339 550 - -
Gabi4651g00056 605 SUPERFAMILY L domain-like 2 241 - -
Gabi4651g00056 605 Pfam Leucine rich repeat 84 144 IPR001611 GO:0005515
Gabi4651g00056 605 Pfam Protein kinase domain 264 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00056 Gabi-Chr4651 473383 477884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00056 1 605 Receptor kinase-like Gene Family AT5G16000 64.763 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi4651g00056 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00056 - - gmx:100797186 1026.16