Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00052 ATGGCGAAAATATCAGAGCAACAAGCTCAAAAAAACAATGTAAGCAATAACAATAATCTTAATGCAACTAACACTGTCACCACCAAGGTGAAACGAACAAGGAAAAGTGTTCCTAGAGACTCCCCACCTCAACGCAGTTCAATATACAGAGGAGTCACGAGGCACAGGTGGACAGGTCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAATCACAGAACAAAAAAGGAAGACAAGTTTACCTTGGTGCTTATGACAATGAAGAGGCCGCAGCACATACTTATGATCTAGCAGCACTGAAATACTGGGGCCAAGATACCATTCTTAATTTTCCGTTATCAAACTACCAGAACGAACTGAAAGAAATGGATGGTCATTCAAGGGAAGAGTATATTGGATCGTTAAGAAGGAAAAGCAGTGGTTTTTCTCGGGGAGTTTCTAAATACAGAGGTGTCGCAAGACATCATCATAATGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGAAATAAATATCTTTATCTCGGAACTTATGCTACCCAAGAAGAAGCTGCCACGGCCTATGACATGGCAGCTATTGAATATCGTGGACTTAATGCTGTAACCAATTTCGATCTCAGCCGTTATATTAAGTGGCTTAAGCCTAACAACAACAACAATAGCAACATTAACAGTAACAATCTTTTTGACGTTAACCCTAATTGTAATACCAACTTGACCCCAAACCCTAATCAAGAACAGGAATTTAGCTTCTTGCACAATCAGGAACCACTCAATAATAATAATGGAGAAGAAGCCATGTTGGTTCAGCCTCGGCCAGCTGGTGCCACATCAGCCCTAGAACTTCTGCTTCAGTCATCTAAGTTCAAGGAAATGATGGAGATGACATCTGTTGCCAATATGTCAACACCTCTGGAGTCTGAGTTGCTACAATGCACATTTCCTGATGAAATTCAGACGTACTTTGAGTGTGAATATTCCAATAAATTTGACGAGGGGGATGATGTCATGTTCAACGAGCTCAATTCCTTTGTGCCTATGTTCCATTGTGATGAGAGTTGA 1071 0.4108 MAKISEQQAQKNNVSNNNNLNATNTVTTKVKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEEAAAHTYDLAALKYWGQDTILNFPLSNYQNELKEMDGHSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNSNINSNNLFDVNPNCNTNLTPNPNQEQEFSFLHNQEPLNNNNGEEAMLVQPRPAGATSALELLLQSSKFKEMMEMTSVANMSTPLESELLQCTFPDEIQTYFECEYSNKFDEGDDVMFNELNSFVPMFHCDES 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00052 356 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Gabi4651g00052 356 Gene3D AP2/ERF domain 48 116 IPR036955 GO:0003700|GO:0006355
Gabi4651g00052 356 MobiDBLite consensus disorder prediction 1 47 - -
Gabi4651g00052 356 FunFam AP2-like ethylene-responsive transcription factor 149 210 - -
Gabi4651g00052 356 SUPERFAMILY DNA-binding domain 47 116 IPR016177 GO:0003677
Gabi4651g00052 356 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 CDD AP2 47 116 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 Pfam AP2 domain 48 106 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 ProSiteProfiles AP2/ERF domain profile. 48 114 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 MobiDBLite consensus disorder prediction 1 31 - -
Gabi4651g00052 356 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Gabi4651g00052 356 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 SMART rav1_2 48 120 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Gabi4651g00052 356 FunFam AP2-like ethylene-responsive transcription factor 47 116 - -
Gabi4651g00052 356 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 263 - -
Gabi4651g00052 356 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00052 Gabi-Chr4651 410048 412501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00052 44 277 AP2-EREBP Transcription Factor Family AT5G57390 54.839 1.51e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi4651g00052 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00052 K09285 - gmx:100804555 543.888