Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00038 ATGTTTCTATGTTTCTACATAGACATCGTTCATTCTAGAGTTTATGGGGAAGAAAATGCTGGCCTTATAAATGGTAAAAGTTCACTTATATCATTCATGTCAGGCATTGTTTCTGATCCTGAAAACGCTCTAGAGAGTTGGAAGTCAACGGGTGTTTATGTTTGTGATTGGTCAGGTGTGAGATGCAACAATGCAAGTGACAGGATCATAGAGCTTGATCTCAGTGGAAAGTCACTGGGAGGCACCATTTCCCCTGCTCTTGCTAACCTCTCTTCCTTACAAATTCTTGATCTTTCTGGGAATTTTTTTGTGGGTCACATTCCAAAAGAACTAGGATATTTAGTTCAGCTTGGACAACTAAGTTTGTCTGGGAATTTTCTTGAAGGGAACATTCCCTCCGAGTTTGGTTCACTTCAGAACTTGTACTACCTTGACATGGGAAGCAATCAGCTTAAGGGAGAGATTCCCCCATCACTTTTCTGCAATGTGACATCATTGAGTTACATAGACCTTTCAAACAATTCCTTAGGGGGACAAATCCCCTTGAACAATGAGTGCATCCTTAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACCAGCTTGTAGGCCAAGTTCCTTTAGCTCTTTCAAACTCCACCAAACTTAAATGGCTTGATTTGGAGTCAAATATGTTGAGTGGAACGCTGCCATCTGAGATTGTACATAATTGGCCACAATTACAATTCCTTTATTTTTCATATAATGACTTTGTTAGCCATGATGACAACACCAACCTTGAACCATTCTTTGCTTCCTTAATGAATTTATCTAACCTTCAAGTACTCGAATTGGCGGGAAACAATCTTGGAGGGAAACTGCCTCATATTATTGGCAATCTTCCTACTAGCTTGCAACAACTTCACCTAGAAGAAAATCTCATATATGGCTCTATACCCCAGCACATTTCCAACCTTGTCAACCTAACATTCTTGAAGTTGTCCAGTAACTTAATAAATGGATCAATCCCTCCCGGCCTATGCCAGATGGGTAGGCTAGAGAGAATTTATTTGTCAAATAATTCACTACATGGTGAGATTCCTTCGACCCTTGGTGACATCCAGCATCTTGGTCTTCTAGATTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCAAACCTTCCGCAGTTAAGAAGGCTTTTACTTTACGACAACCAGCTTTCTGGAACAATCCCACCTAGTCTTGGAAAATGTGTCAATTTGGAGATTTTAGATTTATCTCACAACAAGATCACAGGGATGATTCCTGCAGAAGTTGCAGCCTTGACTAGCTTGAAACTTTACCTGAATTTATCAAGCAATGACTTACATGGGCCTTTACCATTTGAACTCAGCAAAATGGACATGGTGCTAGCTATTGATGTATCCAAGAACAATCTCTCTGGCAGAATCCCGCCACAACTTGAAAGTTGCATTGCACTGGAGTACCTCAACCTTTCTGGTAACTCCTTAGAAGGCCCTCTCCCTGATTCATTAGGCCAATTGCTCTATATTCAAGCACTTGATGTGTCTTCAAATCAATTGACAGGGATAATACCAGGTTCCCTTCAGTTGTCTTCCTCTCTCAAGAAACTCAATTTCTCTTTCAACAAATTCTCAGGGAATGTCTCAAACAAGGGAGCATTTTCGTCTTTTACCATAGACTCTTTCCTTGGAAACGATGGTCTTTGTGGCCCAATAAAAGGCATGCAACGCTGTCATAATAAGAAACTCAGTTATCATTTGGTGTTCCTGTTATTACCTGTGTTACTATTTGGCACCCCTTTGCTGTGCATGGTTAAATACTCCATGGTGAGGAAGCGATTGGCAATTGTTAGCAGCAGAAGTGACTTGGAAGATGAAGAAGAAGAGGAAACAAAAGAGCTCAAGTTCCCAAGAATTTCATATACACAACTTAGAGAAGCCACTGGAGGCTTCAGTGCTTCAAGCCTAATTGGTTCAGGACGGTTTGGAAGAGTGTACAAAGGAGTCTTGTTAGATAATACAAGAGTAGCAGTGAAGGTACTAGATACAACAGCTAGTGAGATTTCAAGGAGCTTTAGAAGGGAATGTCAAATCTTGAAGAAGATCAGGCACAGAAATTTAATAAGGATCATCACAATTTGCAGTAAGCCAGAATTTAAGGCTCTTGTTCTTCCACTGATGTCAAATGGTAGCCTTGAGAGGCACCTTTATCCAAGCGATGAGTTAAGCCAGAGGTTGGATATGGTTCAATTAGTGAAGATTTGCAGTGATGTAGCTGAGGGAATGTCCTATCTGCACCATTTCTCTCCGTTCAAAGTAGTACACTGTGATCTTAAGCCGAGCAATATACTCCTTGATGATGATCTCACAGCTTTGGTTACTGATTTTGGAATTGCAAGGCTTCTAAAAAGTGATGAGAGTACTTCCATCAGTGACACAGCATCTTTCAGTTCAACAAATGGCTTCTTGTGTGGCTCCCTTGGCTATATAGCTCCTGAATATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTACTTGTGTTAGAAATAGTGACAGGTAGACGCCCCACAGATGTTCTCATCCATGAAGGCTCTAGCTTGCATGAGTGGGTTAAGAGACAATACTCAAACTCACACAAGCTTGAAAACATTGTTGAACAAGCACTGCAAAGGTTTTCTCCTTCTGGGGTGCCAAGCCATCATAACAAAATTTTGCAAGATGTTATATTGGAACTCGTTGAGCTGGGGCTACTCTGCACACAGCACAATCCTTCAACAAGACCAAGCATGTTGGATGTAGCCCAAGAAATGGGGATGTTGAAGGACTACCTCACTAATTCAACCTTTCTTCTCATTGAAGATGATTCCAAGATTAATTCTTTCTGCAGTGAAGATAATTTAGTTGAAAAGTAA 2943 0.4067 MFLCFYIDIVHSRVYGEENAGLINGKSSLISFMSGIVSDPENALESWKSTGVYVCDWSGVRCNNASDRIIELDLSGKSLGGTISPALANLSSLQILDLSGNFFVGHIPKELGYLVQLGQLSLSGNFLEGNIPSEFGSLQNLYYLDMGSNQLKGEIPPSLFCNVTSLSYIDLSNNSLGGQIPLNNECILKELRFLLLWSNQLVGQVPLALSNSTKLKWLDLESNMLSGTLPSEIVHNWPQLQFLYFSYNDFVSHDDNTNLEPFFASLMNLSNLQVLELAGNNLGGKLPHIIGNLPTSLQQLHLEENLIYGSIPQHISNLVNLTFLKLSSNLINGSIPPGLCQMGRLERIYLSNNSLHGEIPSTLGDIQHLGLLDLSRNKLSGSIPDSFANLPQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKITGMIPAEVAALTSLKLYLNLSSNDLHGPLPFELSKMDMVLAIDVSKNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGQLLYIQALDVSSNQLTGIIPGSLQLSSSLKKLNFSFNKFSGNVSNKGAFSSFTIDSFLGNDGLCGPIKGMQRCHNKKLSYHLVFLLLPVLLFGTPLLCMVKYSMVRKRLAIVSSRSDLEDEEEEETKELKFPRISYTQLREATGGFSASSLIGSGRFGRVYKGVLLDNTRVAVKVLDTTASEISRSFRRECQILKKIRHRNLIRIITICSKPEFKALVLPLMSNGSLERHLYPSDELSQRLDMVQLVKICSDVAEGMSYLHHFSPFKVVHCDLKPSNILLDDDLTALVTDFGIARLLKSDESTSISDTASFSSTNGFLCGSLGYIAPEYGMGKHASTEGDVYSFGVLVLEIVTGRRPTDVLIHEGSSLHEWVKRQYSNSHKLENIVEQALQRFSPSGVPSHHNKILQDVILELVELGLLCTQHNPSTRPSMLDVAQEMGMLKDYLTNSTFLLIEDDSKINSFCSEDNLVEK 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00038 980 SMART serkin_6 655 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4651g00038 980 SMART LRR_sd22_2 269 295 - -
Gabi4651g00038 980 SMART LRR_sd22_2 138 165 - -
Gabi4651g00038 980 SMART LRR_sd22_2 414 435 - -
Gabi4651g00038 980 Pfam Protein kinase domain 657 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4651g00038 980 SUPERFAMILY L domain-like 319 574 - -
Gabi4651g00038 980 CDD STKc_IRAK 661 947 - -
Gabi4651g00038 980 SMART LRR_typ_2 415 438 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 366 389 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 138 162 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 269 293 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 90 114 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 511 534 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 188 212 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 318 342 IPR003591 -
Gabi4651g00038 980 SMART LRR_typ_2 390 414 IPR003591 -
Gabi4651g00038 980 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 263 359 - -
Gabi4651g00038 980 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Gabi4651g00038 980 SUPERFAMILY RNI-like 71 356 - -
Gabi4651g00038 980 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 731 959 - -
Gabi4651g00038 980 Gene3D Ribonuclease Inhibitor 24 188 IPR032675 -
Gabi4651g00038 980 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 635 730 - -
Gabi4651g00038 980 Gene3D Ribonuclease Inhibitor 189 586 IPR032675 -
Gabi4651g00038 980 ProSiteProfiles Leucine-rich repeat profile. 416 437 IPR001611 GO:0005515
Gabi4651g00038 980 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Gabi4651g00038 980 Gene3D Transferase(Phosphotransferase) domain 1 731 967 - -
Gabi4651g00038 980 SUPERFAMILY Protein kinase-like (PK-like) 637 946 IPR011009 -
Gabi4651g00038 980 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 372 947 - -
Gabi4651g00038 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Gabi4651g00038 980 ProSitePatterns Protein kinases ATP-binding region signature. 661 683 IPR017441 GO:0005524
Gabi4651g00038 980 Pfam Leucine Rich Repeat 490 510 IPR001611 GO:0005515
Gabi4651g00038 980 Gene3D Phosphorylase Kinase; domain 1 625 729 - -
Gabi4651g00038 980 ProSiteProfiles Protein kinase domain profile. 655 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4651g00038 980 Pfam Leucine rich repeat 344 403 IPR001611 GO:0005515
Gabi4651g00038 980 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Gabi4651g00038 980 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 360 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00038 Gabi-Chr4651 312364 315546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00038 26 952 Receptor kinase-like Gene Family AT3G47110 36.016 5.85e-163 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4651g00038 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00038 - - gmx:100792446 1498.8