Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00031 ATGGAAGCCAGTGCTGGACTTGTCGCTGGTTCTCACAACCGCAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTAAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGGCCATGCTATGAGTATGAAAGGAGAGATGGTAGACAACTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGAAGATGAAGAGGACGTGGATGATATTGAACATGAGTTTAATATCGAGGACAAAATGAACAATCATAGCCATTCTGCTGAGGCCATGTTGCAAGGGAAGATGAGTTATGGAAGAGGTCTTGAAGATGATGAGAATGCTCAATTCCCACCTGTGAGAGGGGAGTTCCCAATAGCATCTCATGGTTATGGGGAGCAGATGTTATCTTCTTCGCTGCATAAACAAGTGCACCCATATCCGGGGTCTGAACCACGAAGTGCAAGATGGGATGAAAATAAAGAGGATGGATGCAAAGATAGATCAATGGATGACTGGAAATTGCAACAAGGCAATTTGGGGCCTGAGCCTGATGAAGATCTAGATGCAGCCATGTTAGATGAAGCAAGACAACCACTGTCAAGGAAGGTGCCAATAGCATCTAGCAAAGTCAATCCATATAGGATGGTGATCGTGGCACGCCTTGTTATTCTTGCTTTCTTCCTCAGATATAGGATTTTGAACCCAGTACATAATGCAATGGGTCTATGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATACTTGATCAGTTTCCTAAATGGTTTCCCATTGATAGAGAGACTTATCTTGATCGCCTTTCAATGAGGTATGAACGTGAAGGTGAACCCAATATGCTTGCTCCTGTAGATGTTTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTAAATACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAATTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACAGCAGAGTTTGCAAGGAAGTGGGTGCCATTTTGCAAGAAATTTTCTATAGAACCTCGAGCACCAGAGATGTACTTCTGTGATAAAATTGACTACCTGAAGGACAAAGTGCACCCCACCTTCGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCGCAGAAGGTTCCTTCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCTGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTGTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTCTCTCGAGAGAAAAGGCCTGGATTTCAACACCATAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTCTCTGCGGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAATAGCAAGGCTGTTCGAGAGGCTATGTGCTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGAATTGATAGGCATGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGTCCATGTTTTGGAAGGCGCAAGAAGGTTAAGCATGCAAAGAATGATGCAAATGGAGAGGCTGCAAGAATGGATGATGACAAAGAGTTACTGATGTCCCAGATGGATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACATTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATAGAGCTAGGTTGGATTTATGGGTCTATTACTGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTACTGTATGCCAAAGAGAACAGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATATTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTACAAGGAAGGGAAGCTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTATCTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTACTTCATTGCTCTCTTCTCTTCAATCATTGCAACGGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCCGCACACCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTAGCTGGAATTGACACAAACTTCACAGTTACATCCAAGGCAGCAGATGATGAGGAGTTTGGAGAATTATACACCTTTAAATGGACCACTCTCCTAATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATTTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTCTTCTTTTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTCTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTAATATGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTCTGGGTAAGAATCGATCCATTTGTGTTCAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3087 0.4393 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERRDGRQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDKMNNHSHSAEAMLQGKMSYGRGLEDDENAQFPPVRGEFPIASHGYGEQMLSSSLHKQVHPYPGSEPRSARWDENKEDGCKDRSMDDWKLQQGNLGPEPDEDLDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHNAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSMRYEREGEPNMLAPVDVFVSTVDPMKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCDKIDYLKDKVHPTFVKERRAMKREYEEFKVRINALVAKAQKVPSGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKVKHAKNDANGEAARMDDDKELLMSQMDFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAICLLTDKFIMPPISTFAGLYFIALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVFKTKGPDTKLCGINC 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00031 1028 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 226 995 - -
Gabi4651g00031 1028 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Gabi4651g00031 1028 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 802 IPR029044 -
Gabi4651g00031 1028 CDD mRING-HC-C4C4_CesA 35 85 - -
Gabi4651g00031 1028 Pfam Cellulose synthase 323 1022 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gabi4651g00031 1028 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gabi4651g00031 1028 MobiDBLite consensus disorder prediction 181 202 - -
Gabi4651g00031 1028 SUPERFAMILY RING/U-box 21 107 - -
Gabi4651g00031 1028 MobiDBLite consensus disorder prediction 168 216 - -
Gabi4651g00031 1028 FunFam Cellulose synthase 440 614 - -
Gabi4651g00031 1028 Coils Coil 421 441 - -
Gabi4651g00031 1028 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 469 614 IPR029044 -
Gabi4651g00031 1028 FunFam Cellulose synthase 19 110 - -
Gabi4651g00031 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00031 Gabi-Chr4651 259998 264740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00031 1 1028 Cell Wall Biosynthesis AT5G17420 85.439 0.0 1816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00031 K10999 - gmx:100779834 1971.44