Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00027 ATGGAAGCCAGTGCTGGACTTGTCGCTGGTTCTCACAACCGCAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTAAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGGCCATGCTATGAGTATGAAAGGAGAGATGGTAGACAACTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGAAGATGAAGAGGACGTGGATGATATTGAACATGAGTTTAATATCGAGGACAAAATGAACAATCATAGCCATTCTGCTGAGGCCATGTTGCAAGGGAAGATGAGTTATGGAAGAGGTCTTGAAGATGATGAGAATGCTCAATTCCCACCTGTGAGATTTGCACCATTTTTAGTCCAAGTGAGAGGGGAGTTCCCAATAGCATCTCATGGTTATGGGGAGCAGATGTTATCTTCTTCGCTGCATAAACAAGTGCACCCATATCCGGGGTCTGAACCACCAGGAAGTGCAAGATGGGATGAAAATAAAGAGGATGGATGCAAAGATAGATCAATGGATGACTGGAAATTGCAACAAGGCAATTTGGGGCCTGAGCCTGATGAAGATCTAGATGCAGCCATGTTAGATGAAGCAAGACAACCACTGTCAAGGAAGGTGCCAATAGCATCTAGCAAAGTCAATCCATATAGGATGGTGATCGTGGCACGCCTTGTTATTCTTGCTTTCTTCCTCAGATATAGGATTTTGAACCCAGTACATAATGCAATGGGTCTATGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATACTTGATCAGTTTCCTAAATGGTTTCCCATTGATAGAGAGACTTATCTTGATCGCCTTTCAATGAGGTATGAACGTGAAGGTGAACCCAATATGCTTGCTCCTGTAGATGTTTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTAAATACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAATTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACAGCAGAGTTTGCAAGGAAGTGGGTGCCATTTTGCAAGAAATTTTCTATAGAACCTCGAGCACCAGAGATGTACTTCTGTGATAAAATTGACTACCTGAAGGACAAAGTGCACCCCACCTTCGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCGCAGAAGGTTCCTTCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCTGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTGTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTCTCTCGAGAGAAAAGGCCTGGATTTCAACACCATAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTCTCTGCGGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAATAGCAAGGCTGTTCGAGAGGCTATGTGCTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGAATTGATAGGCATGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGTCCATGTTTTGGAAGGCGCAAGAAGGTTAAGCATGCAAAGAATGATGCAAATGGAGAGGCTGCAAGTCTAAGAGGAATGGATGATGACAAAGAGTTACTGATGTCCCAGATGGATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACATTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATAGAGCTAGGTTGGATTTATGGGTCTATTACTGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTACTGTATGCCAAAGAGAACAGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATATTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTACAAGGAAGGGAAGCTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTATCTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTACTTCATTGCTCTCTTCTCTTCAATCATTGCAACGGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCCGCACACCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTAGCTGGAATTGACACAAACTTCACAGTTACATCCAAGGCAGCAGATGATGAGGAGTTTGGAGAATTATACACCTTTAAATGGACCACTCTCCTAATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATTTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTCTTCTTTTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTCTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTAATATGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTCTGGGTAAGAATCGATCCATTTGTGTTCAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3126 0.4389 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERRDGRQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDKMNNHSHSAEAMLQGKMSYGRGLEDDENAQFPPVRFAPFLVQVRGEFPIASHGYGEQMLSSSLHKQVHPYPGSEPPGSARWDENKEDGCKDRSMDDWKLQQGNLGPEPDEDLDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRILNPVHNAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSMRYEREGEPNMLAPVDVFVSTVDPMKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCDKIDYLKDKVHPTFVKERRAMKREYEEFKVRINALVAKAQKVPSGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKVKHAKNDANGEAASLRGMDDDKELLMSQMDFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRTAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAICLLTDKFIMPPISTFAGLYFIALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVFKTKGPDTKLCGINC 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00027 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Gabi4651g00027 1041 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 479 624 IPR029044 -
Gabi4651g00027 1041 MobiDBLite consensus disorder prediction 194 208 - -
Gabi4651g00027 1041 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Gabi4651g00027 1041 Pfam Cellulose synthase 333 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gabi4651g00027 1041 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 236 1008 - -
Gabi4651g00027 1041 SUPERFAMILY Nucleotide-diphospho-sugar transferases 346 816 IPR029044 -
Gabi4651g00027 1041 Coils Coil 431 451 - -
Gabi4651g00027 1041 CDD mRING-HC-C4C4_CesA 35 85 - -
Gabi4651g00027 1041 MobiDBLite consensus disorder prediction 180 208 - -
Gabi4651g00027 1041 SUPERFAMILY RING/U-box 21 107 - -
Gabi4651g00027 1041 FunFam Cellulose synthase 450 624 - -
Gabi4651g00027 1041 FunFam Cellulose synthase 19 110 - -
Gabi4651g00027 1041 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00027 Gabi-Chr4651 259998 264740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00027 1 1041 Cell Wall Biosynthesis AT5G17420 85.029 0.0 1821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00027 K10999 - gmx:100779834 1976.83