Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00012 ATGAGAAAAGGATCTGAAGGACTTAAGTCAATTGGTCGAACACTTGGATTGGGGGTATCTAGGGCAGTCTTCCCGGAAGATCTTAAAGGGTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTCTGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATTCATTACACTGTCTTGGCATAGACCAAAAGTTGGCAGCCATAGTTACCACCATAAGGACAGTCATTGATGCTTTCTATCTTATGCACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCCTCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGCGGCGGTATTTCATCATAGATTTCCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCTGAGGTCAAAAGGTTCAGATGTACTAGCTACAAAGCAGACCTTGCTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTTCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGCTGTTATACATGCTTGCTAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGTAATGACTCATGCTGGCAAAAGGCTTGCAGTGACGATGGGTGCAATAAAAACTTTCTGTATTGTGGCAACCAGCAAATGGAAGGTTATAGTGCTTGGCAGAATAGAAGTAAAGACATTCTTAATTCAAAGTGCTCTGCCAATGATGATCCTCCACCTTTTGATTATGGAATTTTCAAGCAAGCATTGTCATCTGGTATCGTTTCATCTAAGAAGTTTTTGTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATATCACTAGCTATATTTGGCCTCATCCTCTTTGCGCTTCTAATTGGAAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTCGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAGCAGTGGATGCGTCATCGCTTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAGTGGTTGGCAACGCGGGGCGTAGATGAAGATAGTCTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCTTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGCGACTGAAACCATGTTTATTTACAGAGAGTACTTACATTGTCCGGGAAGGAGATCCAGTTGACGAGATGCTTTTCATCATACGTGGCCGCCTTGAAAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTTTGTGGGGAGGAGCTTTTAACATGGGCTCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAGACCTTTGCCTTAACGGCTGATGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGGCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCTTGTTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGACGCTGCTGAGTCCGAAGGAACTCATGATAATGCTGGTGGCAGTTCACATAGCCTTGGTGCCGCCTTGTTGGCCTCAAAGTTTGCTGCGCACACTCTTCGTGGTGTACATCGCAATCGAATTGCCAAGACTGCCAGGGAGTTAGTAAAACTACAGAAACCCCCCGAGCCTGACTTTACTTCAGATGATGCAGACTAG 2013 0.4352 MRKGSEGLKSIGRTLGLGVSRAVFPEDLKGSEKKIFDPQDKFLLFWNKLFVISCILAVSVDPLFFYLPVINDSLHCLGIDQKLAAIVTTIRTVIDAFYLMHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLLRSKGSDVLATKQTLLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDDGCNKNFLYCGNQQMEGYSAWQNRSKDILNSKCSANDDPPPFDYGIFKQALSSGIVSSKKFLSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSISLAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMRHRLLPQELRERVRRYDQYKWLATRGVDEDSLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVETFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDAAESEGTHDNAGGSSHSLGAALLASKFAAHTLRGVHRNRIAKTARELVKLQKPPEPDFTSDDAD 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00012 670 Pfam Cyclic nucleotide-binding domain 464 553 IPR000595 -
Gabi4651g00012 670 Gene3D Jelly Rolls 440 560 IPR014710 -
Gabi4651g00012 670 Pfam Ion transport protein 45 368 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi4651g00012 670 FunFam Cyclic nucleotide-gated ion channel 1 369 433 - -
Gabi4651g00012 670 SUPERFAMILY Voltage-gated potassium channels 37 364 - -
Gabi4651g00012 670 SUPERFAMILY cAMP-binding domain-like 371 562 IPR018490 -
Gabi4651g00012 670 Gene3D Helix hairpin bin 370 433 - -
Gabi4651g00012 670 MobiDBLite consensus disorder prediction 651 670 - -
Gabi4651g00012 670 FunFam Cyclic nucleotide-gated ion channel 1 440 558 - -
Gabi4651g00012 670 SMART cnmp_10 442 573 IPR000595 -
Gabi4651g00012 670 CDD CAP_ED 442 573 IPR000595 -
Gabi4651g00012 670 Gene3D - 48 367 - -
Gabi4651g00012 670 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 28 664 - -
Gabi4651g00012 670 ProSiteProfiles cAMP/cGMP binding motif profile. 442 572 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00012 Gabi-Chr4651 128418 138460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00012 1 667 Ion Channels AT5G57940 80.000 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00012 K05391 - gmx:100784309 1202.58