Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00011 ATGTTTGACTGTGGTTACAAGTCACAATACATGGGTGGCCAGCCGGAGAACTTTTTGAGGTTGGAGTCATTGGATTCTAGACTGTCTTCATCTTCTGATGCTGGAGTTAAAAAATCTGGATTTAATATTGACAAATTAAGCCATGATGGTCATGGAAGGAGCGTAACCTCTAGGTCTTTTAAAAGAGGAATGAGAAAAGGATCTGAAGGACTTAAGTCAATTGGTCGAACACTTGGATTGGGGGTATCTAGGGCAGTCTTCCCGGAAGATCTTAAAGGGTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTCTGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATTCATTACACTGTCTTGGCATAGACCAAAAGTTGGCAGCCATAGTTACCACCATAAGGACAGTCATTGATGCTTTCTATCTTATGCACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCCTCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGCGGCGGTATTTCATCATAGATTTCCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCTGAGGTCAAAAGGTTCAGATGTACTAGCTACAAAGCAGACCTTGCTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTTCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGCTGTTATACATGCTTGCTAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGTAATGACTCATGCTGGCAAAAGGCTTGCAGTGACGATGGGTGCAATAAAAACTTTCTGTATTGTGGCAACCAGCAAATGGAAGGTTATAGTGCTTGGCAGAATAGAAGTAAAGACATTCTTAATTCAAAGTGCTCTGCCAATGATGATCCTCCACCTTTTGATTATGGAATTTTCAAGCAAGCATTGTCATCTGGTATCGTTTCATCTAAGAAGTTTTTGTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATATCACTAGCTATATTTGGCCTCATCCTCTTTGCGCTTCTAATTGGAAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTCGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAGCAGTGGATGCGTCATCGCTTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAGTGGTTGGCAACGCGGGGCGTAGATGAAGATAGTCTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCTTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGCGACTGAAACCATGTTTATTTACAGAGAGTACTTACATTGTCCGGGAAGGAGATCCAGTTGACGAGATGCTTTTCATCATACGTGGCCGCCTTGAAAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTTTGTGGGGAGGAGCTTTTAACATGGGCTCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAGACCTTTGCCTTAACGGCTGATGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGGCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCTTGTTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGACGCTGCTGAGTCCGAAGGAACTCATGATAATGCTGGTGGCAGTTCACATAGCCTTGGTGCCGCCTTGTTGGCCTCAAAGTTTGCTGCGCACACTCTTCGTGGTGTACATCGCAATCGAATTGCCAAGACTGCCAGGGAGTTAGTAAAACTACAGAAACCCCCCGAGCCTGACTTTACTTCAGATGATGCAGACTAG 2202 0.4323 MFDCGYKSQYMGGQPENFLRLESLDSRLSSSSDAGVKKSGFNIDKLSHDGHGRSVTSRSFKRGMRKGSEGLKSIGRTLGLGVSRAVFPEDLKGSEKKIFDPQDKFLLFWNKLFVISCILAVSVDPLFFYLPVINDSLHCLGIDQKLAAIVTTIRTVIDAFYLMHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLLRSKGSDVLATKQTLLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDDGCNKNFLYCGNQQMEGYSAWQNRSKDILNSKCSANDDPPPFDYGIFKQALSSGIVSSKKFLSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSISLAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMRHRLLPQELRERVRRYDQYKWLATRGVDEDSLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVETFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDAAESEGTHDNAGGSSHSLGAALLASKFAAHTLRGVHRNRIAKTARELVKLQKPPEPDFTSDDAD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00011 733 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Gabi4651g00011 733 MobiDBLite consensus disorder prediction 45 64 - -
Gabi4651g00011 733 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi4651g00011 733 Gene3D Jelly Rolls 503 623 IPR014710 -
Gabi4651g00011 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 727 - -
Gabi4651g00011 733 MobiDBLite consensus disorder prediction 714 733 - -
Gabi4651g00011 733 Gene3D - 111 430 - -
Gabi4651g00011 733 SMART cnmp_10 505 636 IPR000595 -
Gabi4651g00011 733 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
Gabi4651g00011 733 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Gabi4651g00011 733 Pfam Cyclic nucleotide-binding domain 527 616 IPR000595 -
Gabi4651g00011 733 CDD CAP_ED 505 636 IPR000595 -
Gabi4651g00011 733 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Gabi4651g00011 733 Gene3D Helix hairpin bin 433 496 - -
Gabi4651g00011 733 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00011 Gabi-Chr4651 128418 140953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00011 1 731 Ion Channels AT2G23980 75.603 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00011 K05391 - gmx:100784309 1291.17