Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4651g00004 ATGGGTTTGGGAGTATTTGGTTCTGTTCTGATTTTGACACTCTTGTTCAAGCATTTGGCGTCTCAGCAACCGAACACTGATGAGTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGGGTTAACATCCTCTCAAGCCAACAACTTCTCTACTTCTGTTTGTTCATGGCAAGGGGTTTTCTGTGATGCCAATAAGGAACATGTTGTTGACTTGATGCTTTCTGATATGGGCCTCACTGGCCTTATTCCTGATACCACCATAGGCAAGCTCAGCAAACTTCAATCTTTGGATCTTAGCTACAACAAAATCACTGGCTTACCTTCAGATTTCTGGAGTTTAAGCTCTCTCAAGAACCTTAACCTCTCCTCCAATCAGATTTCTGGTTCATTGACTAACAACATTGGCAACTTTGGTTTGCTAGAAAGCTTTGACTTGTCCAGCAACAGTTTCTCTGAGGAAATTCCTGAAGCTATTGGCTCCCTTGTGAGTCTGCAGATCCTCAAACTTGACCACAACAGGTTTGCACATAGCATACCCTCTGGGATTCTCAAGTGCCAATCTCTAGTTTCAATGGATCTTTCATCAAATCAACTTAATGGAACCCTTCCAGATGGTTTTGGTGCTGCGCTTCCTAAGCTCAAGACATTGAATCTTGCTGGGAATAACATTTCTGGTCGTATTTCAGATATCTCTGAGTTGAAGTCCATTGTGAGTCTCAACATATCAGGCAATTCGTTTGAGGGTTCTGTCATGGGTGTGTTTCAGGAAAGGTTGGAGGTGGTAGACCTAAGCAGAAACAAATTTCAAGGTCACATTCCCCAGGTACAGCACAACTCTAATTACAATTGGTCTCATTTAGTTTATCTGGACTTGTCAGAGAATCAGCTTAGTGGGGAAATTTTCCAAAATTTGAATGAATCCTTGAATCTAAAACACCTTAATCTTGCACACAACAGATTTACCAGACAGAAATTCCCACGGATTGAAATGCTCCCAGGATTGGAGTATCTGAACTTGTCCAAAACTAGTCTTGTTGGTCACATTCCTGATGGAATCTCACAACTGACTAATTTAGATGCACTAGATCTTTCTATGAATCATCTAACTGGGAACATTCTCTTACTGAGTAATAAACATCTCCAAATTCTTGACCTTTCAAACAACAATTTGAGTGGACCAGTCCCTCCATCTGTCTTAGAGAAACTCCCCCAGATGGTGAAATACAACTTCTCTTATAATAACTTAACCCTTTGTGCTTCAGAAATCAAACCTGAGATCCTGCAAACAGCATTCTTTGGATCATTGAACAGTTGTCCAATTGCTGCAAATCCTCATATTTTCAAAAGAAGAGCCACTGGACATAAGGGAATGAAGCTAGCTCTGGTACTGACCTTCTCAATGATCTGCTTGCTGGCTGGCCTTTTATTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAAGTTAAGCAATATTCATACAAAGAAGAACAGAATATCTCAGGTCCCTTTTCATTCCAAACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAATATTACATTTGCAGACCTCTTGTCTGCAACTTCAAATTTTGACCGTGGTACCCTTTTGGCTGAAGGAAAATTTGGTCCTGTCTACAGAGGCTTTCTCCCTGGTGGTATTCATGTAGCAGTTAAAGTTTTGGTTGTTGGATCTACATTGACAGATCAAGAAGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACTGGATATTGTGTTGCTGGGGATCAAAGGATTGCTATATATGATTACATGGAAAATGGTAACTTGCAAAATCTGCTTTATGACTTGCCACTTGGGGTACAAAGCACAGATGACTGGAGCACAGATACATGGGAAGAAGCTGACAATAATGGGATTCAAAATGCTGGCTCTGAAGGATTACTCACAACTTGGAGATTTCGCCACAAAATTGCCCTCGGCACTGCTAGAGCATTGGCATTTCTGCATCATGGATGCTCACCTCCAATAATTCACAGAGCTGTTAAAGCTAGCAGTGTCTATTTGGACTATGATCTGGAACCAAGATTGTCTGATTTTGGATTGGCTAAAATTTTTGGAAATGGCTTGGATGAGGAGATTGCACGTGGTTCACCTGGTTATGTTCCCCCAGAGTTTTCTCGACCAGATTTTGACTCCCCAACACCAAAATCTGATGTATACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACTGGAAAGAAGCCAGTTGGAGATGATTACCCTGATGATAAAGAAGCAACTTTGGTAAGTTGGGTCAGAGGACTAGTAAGAAAAAACCAAGCTTCAAGAGCTATTGATCCAAAAATTTGCAATACAGGACCATATGAACAAATGGAGGAGGCTCTCAAGATTGGCTATCTGTGCACAGCTGAATTGCCCTCCAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTAAAGGATATTGAACCTACTGGTAGCTAG 2562 0.4126 MGLGVFGSVLILTLLFKHLASQQPNTDEFFVSEFLKKMGLTSSQANNFSTSVCSWQGVFCDANKEHVVDLMLSDMGLTGLIPDTTIGKLSKLQSLDLSYNKITGLPSDFWSLSSLKNLNLSSNQISGSLTNNIGNFGLLESFDLSSNSFSEEIPEAIGSLVSLQILKLDHNRFAHSIPSGILKCQSLVSMDLSSNQLNGTLPDGFGAALPKLKTLNLAGNNISGRISDISELKSIVSLNISGNSFEGSVMGVFQERLEVVDLSRNKFQGHIPQVQHNSNYNWSHLVYLDLSENQLSGEIFQNLNESLNLKHLNLAHNRFTRQKFPRIEMLPGLEYLNLSKTSLVGHIPDGISQLTNLDALDLSMNHLTGNILLLSNKHLQILDLSNNNLSGPVPPSVLEKLPQMVKYNFSYNNLTLCASEIKPEILQTAFFGSLNSCPIAANPHIFKRRATGHKGMKLALVLTFSMICLLAGLLFLAFGCRRKTKMWEVKQYSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDQEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEADNNGIQNAGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGNGLDEEIARGSPGYVPPEFSRPDFDSPTPKSDVYCFGVVLFELLTGKKPVGDDYPDDKEATLVSWVRGLVRKNQASRAIDPKICNTGPYEQMEEALKIGYLCTAELPSKRPSMQQIVGLLKDIEPTGS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4651g00004 853 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Gabi4651g00004 853 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Gabi4651g00004 853 FunFam Nuclear pore complex protein NUP107 29 179 - -
Gabi4651g00004 853 SMART LRR_typ_2 112 136 IPR003591 -
Gabi4651g00004 853 SMART LRR_typ_2 377 400 IPR003591 -
Gabi4651g00004 853 SMART LRR_typ_2 330 354 IPR003591 -
Gabi4651g00004 853 SMART LRR_typ_2 209 232 IPR003591 -
Gabi4651g00004 853 SMART LRR_typ_2 89 111 IPR003591 -
Gabi4651g00004 853 SMART LRR_typ_2 160 184 IPR003591 -
Gabi4651g00004 853 Pfam Protein tyrosine and serine/threonine kinase 551 843 IPR001245 GO:0004672|GO:0006468
Gabi4651g00004 853 Gene3D Ribonuclease Inhibitor 373 435 IPR032675 -
Gabi4651g00004 853 SUPERFAMILY Protein kinase-like (PK-like) 524 845 IPR011009 -
Gabi4651g00004 853 ProSiteProfiles Leucine-rich repeat profile. 211 233 IPR001611 GO:0005515
Gabi4651g00004 853 PRINTS Leucine-rich repeat signature 92 105 - -
Gabi4651g00004 853 PRINTS Leucine-rich repeat signature 354 367 - -
Gabi4651g00004 853 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Gabi4651g00004 853 Pfam Leucine rich repeat 69 125 IPR001611 GO:0005515
Gabi4651g00004 853 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Gabi4651g00004 853 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Gabi4651g00004 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Gabi4651g00004 853 Gene3D Transferase(Phosphotransferase) domain 1 623 852 - -
Gabi4651g00004 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 230 848 - -
Gabi4651g00004 853 ProSiteProfiles Protein kinase domain profile. 547 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4651g00004 853 Gene3D Ribonuclease Inhibitor 179 277 IPR032675 -
Gabi4651g00004 853 Gene3D Ribonuclease Inhibitor 278 372 IPR032675 -
Gabi4651g00004 853 Pfam Leucine Rich repeat 375 391 IPR001611 GO:0005515
Gabi4651g00004 853 Pfam Leucine Rich repeat 283 298 IPR001611 GO:0005515
Gabi4651g00004 853 SMART LRR_sd22_2 89 120 - -
Gabi4651g00004 853 SMART LRR_sd22_2 209 231 - -
Gabi4651g00004 853 SMART LRR_sd22_2 376 403 - -
Gabi4651g00004 853 SMART LRR_sd22_2 282 305 - -
Gabi4651g00004 853 SUPERFAMILY L domain-like 45 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4651g00004 Gabi-Chr4651 52697 55258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4651g00004 69 848 Receptor kinase-like Gene Family AT5G07280 32.895 3.02e-114 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gabi4651g00004 PK_Tyr_Ser-Thr 3.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4651g00004 - - gmx:100787157 1484.93