Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4648g00003 ATGGCGGAAATGGTGTGGTCATTTGTTCGTGAACATTTGATTCCAGTATTAATGGAAACAGCCAATACGATCACGGGCGTCCCAAAAGAAATTGCCGAAATTAAGCATGGACTGGAAAGCATTCAAGAGTTCATGAACGATGCAGACAGAATGGCTGAAGCTGAAGTAGACAATACCCGTGGTGGAATCAAAACAAAGGTGAAGTTGCTAAGAGAAGCAGCTTTTCGCATGGAAGATGTCATTGATAAATATATTATCTCTGAGGAACAACAACCTCGCGATCCTGGCTGTGCTGCTTTACCCTGTGACCCAGCTGACTTCACCAAAACTATGATCCTTCGGCTTCAGATAGCATGTAAGATTCAAGGTATTAAATCACAAGTTCGTGAAATCAAGGAAAGAAGTGAAAAAGATGGCGCTTCCAAATCCAGTCTTCTTTGGGACAAGCACCAGGAAGGAAGAGCAGAGCGCACTGTCATATCTCTGGTAGGAATGGGAGGGCAGGGGAAAACCACTCTTGCGAAGAAAGTTTTTGATAACAAAGAGGTGATTGAACACTTCAATTGCCATGCATGCATCATAGTATCTCAATCCTACACCGTGGATAGATTGGATAGATTGTTGAGGGACATGCTGCAGAAGTTTTACGAAGAAAACAAGGAGGATCCTCCTCCAGGTATTTCTTCAATGGATCGAGATTCATTGATAAAGGAAGTAAGAAACTACTTGCGGCAAAAGAGGTATGTCGTCTTATTTGATGACGTGTGGAGTGAACACTTTTGGGAAGTGATCCAATTTGCTTTAATTGATAGTAAAAATGGAAGTAGGATATTTATCACAACTAGGGACATGCGTGTTGCTAGTTGTTGCAAAAAAACTTCTTTTGTTCAAGTGCATGAACTGCGACCTTTAAATCAAGAAAAATCTTTTGAGTTGTTCTGTAAAAAAGCATTCAAATTTGATTTAAATGGATGTTGTCCACCAGATCTTATGGGCATATCTTCTGAGATTGTTAAAAAATGTCAGGGGTTACCACTAGCAGTTGTGGCCACTGGTTGTCTTTTATCTACCAAAGGTAGAGATGCAATTGAATGGAGAAAGTTTAATCAAAATCTAAGTTCAGAGTTGGAGAAAAATTCCCATGTATCTCCTATAACCATGATTTTAGCTTTTAGTTATCATGATTTGCCTTACTATCTCAAACAATGCTTCTTGTATTTTGGAATATATCCGGAAGACTATGAAGTTAAGTCAAAAAGATTGTTTCAGCAATGGATTGCTGAGGGTTTTGTCAAACATGAAATGAGGAAAACTTCGGAAGAAGTTGCAAAAGAATATTTGACAGAATTGGTTAACAGAAGTTTAGTGCAAGTATCTTCCTTTACCATTGATGGCAAAATTAGGAGTTGTCACATTCATGACTTATTGCGTGACATGATCCGTATAAAATGTAAGGATTTAAGTTTTTGCCACTATATTAATGAATATGGTGAGCCAGAGTTAAGTGGGATAATTGGGCACCTATCAATACAAAGCTTCAGTGTCTATAATTTAAAGGGAAGTATAGAAAGCTCGGACGTACGATCATTGTTTATTTTCAATTTCGGAGACGACTATGAAATATTGAATGAACATTTTGCAAGGATTATCCTTACAAAATACAAGGCATTGAAGATACTTGATTTTGAAGATGCAAATCTTGATCTTGAAGATGAACTACTTGATCGTATTGTTAATAATTTGGGGTATTTAATCCACTTGAGGTATTTAAGCTTTACAGGATTAGGTTTATCTGATCTTCCCAAAGCCATTGGTAAGCTTCAGAATCTGGAGACCTTGGATCTAAGGCGTACAAATGTCCATGATTTGCCAAGGGAGATTCGCAAGCTTAAAAGGCTACGACATCTCCTTTTGAGTTCTTCCACTTCTTTGATTCAATTGAAGGATTGTATTAGAGTGATGACATCCCTGCAAACATTGTGTAAAGTGAGCATAGATGGCATCGGCAAAGAGTTATTCATAGAGCTGGGAAAGCTGTGA 2040 0.3814 MAEMVWSFVREHLIPVLMETANTITGVPKEIAEIKHGLESIQEFMNDADRMAEAEVDNTRGGIKTKVKLLREAAFRMEDVIDKYIISEEQQPRDPGCAALPCDPADFTKTMILRLQIACKIQGIKSQVREIKERSEKDGASKSSLLWDKHQEGRAERTVISLVGMGGQGKTTLAKKVFDNKEVIEHFNCHACIIVSQSYTVDRLDRLLRDMLQKFYEENKEDPPPGISSMDRDSLIKEVRNYLRQKRYVVLFDDVWSEHFWEVIQFALIDSKNGSRIFITTRDMRVASCCKKTSFVQVHELRPLNQEKSFELFCKKAFKFDLNGCCPPDLMGISSEIVKKCQGLPLAVVATGCLLSTKGRDAIEWRKFNQNLSSELEKNSHVSPITMILAFSYHDLPYYLKQCFLYFGIYPEDYEVKSKRLFQQWIAEGFVKHEMRKTSEEVAKEYLTELVNRSLVQVSSFTIDGKIRSCHIHDLLRDMIRIKCKDLSFCHYINEYGEPELSGIIGHLSIQSFSVYNLKGSIESSDVRSLFIFNFGDDYEILNEHFARIILTKYKALKILDFEDANLDLEDELLDRIVNNLGYLIHLRYLSFTGLGLSDLPKAIGKLQNLETLDLRRTNVHDLPREIRKLKRLRHLLLSSSTSLIQLKDCIRVMTSLQTLCKVSIDGIGKELFIELGKL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4648g00003 679 Pfam NB-ARC domain 152 394 IPR002182 GO:0043531
Gabi4648g00003 679 Gene3D - 6 116 - -
Gabi4648g00003 679 FunFam Probable disease resistance protein At1g63360 393 482 - -
Gabi4648g00003 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 407 IPR027417 -
Gabi4648g00003 679 Gene3D - 117 298 IPR027417 -
Gabi4648g00003 679 PRINTS Disease resistance protein signature 159 174 - -
Gabi4648g00003 679 PRINTS Disease resistance protein signature 605 621 - -
Gabi4648g00003 679 PRINTS Disease resistance protein signature 341 355 - -
Gabi4648g00003 679 PRINTS Disease resistance protein signature 242 256 - -
Gabi4648g00003 679 PANTHER DISEASE RESISTANCE PROTEIN RP 33 662 IPR044974 GO:0006952
Gabi4648g00003 679 FunFam Probable disease resistance protein At1g61300 126 294 - -
Gabi4648g00003 679 Gene3D Ribonuclease Inhibitor 547 678 IPR032675 -
Gabi4648g00003 679 SUPERFAMILY L domain-like 472 661 - -
Gabi4648g00003 679 Gene3D - 393 484 IPR036388 -
Gabi4648g00003 679 Gene3D - 303 392 IPR042197 -
Gabi4648g00003 679 Pfam Rx N-terminal domain 7 93 IPR041118 -
Gabi4648g00003 679 CDD RX-CC_like 7 133 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4648g00003 Gabi-Chr4648 20069 22229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4648g00003 160 360 WRKY Transcription Factor Family AT5G45050 30.542 3.78e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4648g00003 K13457 - gmx:100819372 622.468