Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4642g00010 ATGGAGGGAACAAACCAAAAGATTTTCAGCTTCATCAATGATACAAATGAGCAGCAAAATCCCAGAACCCATAACCAATCCCCTTATCTTTCTTTAGCCAAACTTGCACAGAATTACCCTCCTGGCTTTCCCAGAAAGGTATTTGCTGAGACTATAGGCACCTATCTATTGGTGTTTGTGTCAAGTGGCTCTGCTGCTCTTAATGCTATTGATGAAAACAGAGTCTCAAAACTTGCAGCTTCACTTGCAGGAGGATTCATTGTAACGGTGATGATTTATGCGATTGGACACATCTCTGGGGCACACATGAATCCTGCTGTCTCCATAGCTTTTGCCACCGTGAGGCATTTTCCTTGGATACAGGTCCCATTTTACATTGCAGCTCAACTCACAGGAGCTATTTCTGCTTCATATACGCTGCGAGCACTGCTAGATCCAGCAAAGCAGCTTGGGGAAACGACGCCTTCTGGATCAGACATTCAAGCACTTATCATGGAAATGGTTTCCACCTTCACCATGGTGTTCCTCGCCACCGCCGTGTCCACTGACACAAAAGCTATAGGAGAGTTGGCAGGAGTAGCAGTAGGTTCTTCTGTTAGCATAGCAAGCATTGTCGCCGGACCAATATCAGGGGGATCAATGAATCCAGCAAGGACATTAGGTCCTGCAATTGCCAGTGCATCCTACAAGGGACTTTGGGTCTATATTGTTGGACCAATTACAGGGGCACTTTTAGGGGCATGGTCTCACACTGTGATTCAGGAGAAAGATAAGCCAGATTCTGTAATTTCACTATCTTCCTTTCCATTCAAACTACGCCAGAAGATGAATAAAACTGAGCTAGGTAGCAACAACAACCACCTCAGCTCGGTGTGA 876 0.4555 MEGTNQKIFSFINDTNEQQNPRTHNQSPYLSLAKLAQNYPPGFPRKVFAETIGTYLLVFVSSGSAALNAIDENRVSKLAASLAGGFIVTVMIYAIGHISGAHMNPAVSIAFATVRHFPWIQVPFYIAAQLTGAISASYTLRALLDPAKQLGETTPSGSDIQALIMEMVSTFTMVFLATAVSTDTKAIGELAGVAVGSSVSIASIVAGPISGGSMNPARTLGPAIASASYKGLWVYIVGPITGALLGAWSHTVIQEKDKPDSVISLSSFPFKLRQKMNKTELGSNNNHLSSV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4642g00010 291 CDD MIP 45 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Gabi4642g00010 291 Gene3D Glycerol uptake facilitator protein. 5 261 IPR023271 -
Gabi4642g00010 291 PANTHER AQUAPORIN NIP2-1 17 266 IPR034294 -
Gabi4642g00010 291 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 Pfam Major intrinsic protein 43 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4642g00010 291 SUPERFAMILY Aquaporin-like 40 259 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4642g00010 Gabi-Chr4642 84114 90553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4642g00010 45 280 Major Intrinsic Protein MIP AT5G37820 46.639 3.61e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4642g00010 K09874 - gmx:100788071 361.303