Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4640g00003 ATGGCATCAACGGAGGCGACGATGAAGGGGAATTGTGTGAACCATAACGATAGTAGCAGGAACGGTGTTTCCGAGGGTCAGAATGCTCATTCGTCGTTCACGGCAAGAGAGGGGGAAGCTGCACTTTTCAGGGAGCTATGGCATGCCTGTGCTGGACCCCTTGTAACCGTGCCACGGGAAAGAGAACGCGTCTTTTATTTCCCTCAGGGACATATTGAGCAGGTGGAGGCGTCCACCAATCAGGTGGCGGACCAACACATGCCATTGTACAATCTACCATCTAAGATCCTTTGTCGGGTTATCAACGTGCAGCTGAAGGCGGAACCCGACACGGACGAGGTATTTGCCCAGGTGACCTTACTTCCGGAGCCAAATCAAGATGAGAATGCTGTGGAGAAAGAGCCTCCACCACCTCCGCCTCGGAGATTTCACGTTCATTCATTCTGTAAAACTCTGACGGCCTCGGATACTAGTACCCATGGTGGGTTTTCCGTGCTGAGACGCCATGCTGATGAATGTCTTCCGCCACTGGACATGTCAAAGCAGCCACCAACCCAGGAATTGGTAGCTAAGGATTTGCATGGGAGTGAGTGGCGATTCAGACATATCTTTCGGGGTCAACCTCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAGAGGCTAGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTCAGGCGAGCAATGAGACAGCAGAGTAATGTTCCATCCTCAGTTATCTCTAGCCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTCCACTGGGACCATATTCACTGTTTATTATAAACCTAGGACCAGTCCCGCGGAATTCATTGTTCCGTATGACCAATATATGGAATCCCTAAAAAATAATTATACCATAGGAATGCGATTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGCTGATTCACAAAGGTGGAGAGAGTCCAGATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACTTACCTCGTCCTGAGAGAGTTTCACCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCCCTGAATCCTCATTCAATGCCCAGACCTAAAAGGCCTAGGTCTAATGCAGTTCCATCATCCCCAGATTCTTCGGTTCTTACTCGAGAAGCATCATCTAAGGTTAGCGTAGACCCTTTACCAGCAAATGGGTTTTCAAGGGTTTTGCAAGGTCAAGAATTCGCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCTGATACTGCAGAGAAGTCTGTCGTATGGCCACCTGCAATAGATGATGAAAAGATTGATGTTGTTTCTACTACAAGGAGGTATGGTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACATATTCAGATCTTCTTTCTGGCTTTGGGGCCAGTGGAGATCCTTCCCATCTATCCTTGGTTGATCAAATGAGCCCTGTAGGTTATTCTGCTAGAAAGCATTCGTTGGACCATGAAGGCAAACATCATTTGCATCATCCTTGGCCTGTAATGCCCTCTAATAGTCTATCACTGAACCTCTTGGACTCTAATACAAAATGCTCTGTAATTGGTGGAGATACAGCTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGTGCTTCATGGTCATAAAGTTGAGCATCCGCATGGAAACTTGATGCCACCCCCACCCCCAACTCGGTATCAGAGTCCTCCTTCCAGAGAGCTTATGTCCAAAACAACGACAGGAAAAACTTGCGAGGCTGTGAAAACAAAAGATGGTGACTGTAAGCTGTTTGGTATCTCACTTATCAGTAGCCCCACTGCACCCGAGCCTTCTGTATCACAAAGAAATGTTACAAACGAGCCAGCTGGTCAGACACATCTTTTGTTACACCAACAACGAACTTTTGAAAATGATCAGAAGTCAGACTACCCCAAGGGCTCAAATTCGGAAGGTGGTCTGGTTGCCATTGATGACGGGGAAAAGCCATTACAAACTTCTCAGTTGCATCTGAAAGATGTTCAAGCCAAACCACTCAGTGGTTCTGCCAGGAGTTGCACTAAAGTTCACAAGAAGGGAATTGCGCTTGGTAGGTCACTGGACCTTACAAAGTACAGTAACTATGATGAATTAGTTGCTGAATTGGATCAGCTGTTTGAATTTGGAGGTGAATTATTGTCAACAAAGAAGAATTGGCTTATTGTATATACTGATAATGAGGGTGACATGATGCTTGTAGGCGATGATCCATGGCAGGAGTTTTGTGCCATGGTTCGCAAAATTTATATCTACCCAAAAGAGGAGATTCAGAAAATGAGCCCGGGTGCCTTGAGTTCAAAAATTGAAGAGAATCAGTCAGCTAGCGAAGGTGGTGATGCAAAAGAAGTTAAATGTCAGCTGCATCAGAAGTTAAATTCAGAGAATGGTTTCGATGCCTAA 2550 0.462 MASTEATMKGNCVNHNDSSRNGVSEGQNAHSSFTAREGEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPLYNLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQSNVPSSVISSHSMHLGVLATAWHAISTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSQRWRESRWRCLKVRWDETSNLPRPERVSPWKIEPALAPPALNPHSMPRPKRPRSNAVPSSPDSSVLTREASSKVSVDPLPANGFSRVLQGQEFATLRGNFAESNESDTAEKSVVWPPAIDDEKIDVVSTTRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSHLSLVDQMSPVGYSARKHSLDHEGKHHLHHPWPVMPSNSLSLNLLDSNTKCSVIGGDTAYQARGNLRYSAFGEYPVLHGHKVEHPHGNLMPPPPPTRYQSPPSRELMSKTTTGKTCEAVKTKDGDCKLFGISLISSPTAPEPSVSQRNVTNEPAGQTHLLLHQQRTFENDQKSDYPKGSNSEGGLVAIDDGEKPLQTSQLHLKDVQAKPLSGSARSCTKVHKKGIALGRSLDLTKYSNYDELVAELDQLFEFGGELLSTKKNWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGALSSKIEENQSASEGGDAKEVKCQLHQKLNSENGFDA 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4640g00003 849 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Gabi4640g00003 849 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 810 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi4640g00003 849 MobiDBLite consensus disorder prediction 379 425 - -
Gabi4640g00003 849 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi4640g00003 849 MobiDBLite consensus disorder prediction 811 831 - -
Gabi4640g00003 849 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4640g00003 849 CDD B3_DNA 146 248 IPR003340 GO:0003677
Gabi4640g00003 849 FunFam Auxin response factor 717 810 - -
Gabi4640g00003 849 MobiDBLite consensus disorder prediction 592 619 - -
Gabi4640g00003 849 Gene3D - 145 250 IPR015300 -
Gabi4640g00003 849 Gene3D - 311 381 - -
Gabi4640g00003 849 SMART B3_2 148 250 IPR003340 GO:0003677
Gabi4640g00003 849 SUPERFAMILY DNA-binding pseudobarrel domain 145 277 IPR015300 -
Gabi4640g00003 849 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Gabi4640g00003 849 Pfam AUX/IAA family 762 808 IPR033389 -
Gabi4640g00003 849 FunFam Auxin response factor 311 383 - -
Gabi4640g00003 849 FunFam Auxin response factor 146 250 - -
Gabi4640g00003 849 MobiDBLite consensus disorder prediction 400 415 - -
Gabi4640g00003 849 ProSiteProfiles PB1 domain profile. 721 803 IPR000270 GO:0005515
Gabi4640g00003 849 Gene3D - 717 810 - -
Gabi4640g00003 849 SUPERFAMILY CAD & PB1 domains 724 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4640g00003 Gabi-Chr4640 57073 62068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4640g00003 1 843 B3 DNA Binding Superfamily AT5G62000 63.605 0.0 1083
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi4640g00003 AUX_IAA 2.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4640g00003 - - gmx:100797082 1434.85