Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4640g00002 ATGATGTCTAGAATAAACAACGTTGCTACTTGGATGGATGAAAGAGAGGACGAAAACTCTGCTTCCGCTTCATGGCCTAGAAACTCCAAGCCCAACAACATTATCACAACCACCGACAGAAACACTCATGTTCCTGGTTCTTCTTCTTCTTCTGGTTTTGTTGAAAACAGAGAAGACTTGGGTTCTCTCTGTGCTTTCAAACCCATGCTCGAAATAGACGAGGAATGGTACCTGGGAAACCACCCAGATATTAGGGACATGGCTTTCACCCCAAACTTCGTTGACCCAGATAGCCTTTTGCTTCACACAGTTGACTCATCATCTTCTTGTTCTCCCTCTTCCTCTGTGTTCAACAACCTCGACCCTTCATTATCACAAGTTCAATACTTTCTCCCTCCCAACCCAAAACCCACCACCATCACCACAACAACCTTGCCTTCTCTTCTCAACCCTTTTGATATGGGTTGCGAAGTGGCGTTTCTTGAGCCTCAAGCTTCCACAACTTCTCCAGTGCTCAATAGAGCTTCTTCTTCTTCCCTTCTTGGTGGTTTCGTTGACTTGAGTTCAAAGAACCAGTTAGCCCTTCCTAACATGTGCTCAGATTCCCAGTTAGCAATCGCCAGCATGCACCAGTTGCCACAAAGTAGCACCGGGTTTGCGGGTTTTCAGAACTTGGAAGAAGGTTCTGGAAAGCCTCTGTTTCTGAACAGGTCCAAGATTTTGAGACCCCTTGAATCGTTGCCTCCATCTGGAGCACAACCCACTCTGTTTCAGAAGAGAGCAGCACTAAGAAAAAACATGGGATCAGAAGGTGGTGTTGGTGTTCCAAATAGGGGCAAGTGTGAAGTTGGTGAAGGGAGTGATAAGAAGAGGAAGGTGAGTAGCGTGGAGGAGATAGAAGATGCAAGTTTTGATGGGTCAGGATTGAACTATGATTCTGATGACTTGACTGAGAGTAATAACAATAATAAGATGGAAGATATTAATTGCAAGAATGGTGGAAACAGCTCCAATGCCAACAGCACCGTCACCGGTGTGGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCTGAACGCCGCCGTAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAGTATCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAACGAGTTGGAGTCAACACCTGCCGGCTCTTCACTCACACCTGCCTCAAGCTTCCATCCTTTGACACCTACTCCACCTGCACTGCCAAGCCGTATTAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCCAATGGCCAATCTCCCAGGGTTGAGGTTCGGTTGCGCGAAGGAAGGGCTGTAAATATCCACATGTTTTGTTCCCGCAAACCTGGCCTGTTGCTCTCAGCCATGAGGGCTTTGGATAACCTTGGGTTAGATATCCAGCAGGCTGTTATTAGCTGTTTCAATGGATTTGCTATGGATATTTTTCGAGCTGAGCAATGCAAAGAAGGTCAGGATGTCCATCCAGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCAATGGCATGATCTAA 1638 0.4621 MMSRINNVATWMDEREDENSASASWPRNSKPNNIITTTDRNTHVPGSSSSSGFVENREDLGSLCAFKPMLEIDEEWYLGNHPDIRDMAFTPNFVDPDSLLLHTVDSSSSCSPSSSVFNNLDPSLSQVQYFLPPNPKPTTITTTTLPSLLNPFDMGCEVAFLEPQASTTSPVLNRASSSSLLGGFVDLSSKNQLALPNMCSDSQLAIASMHQLPQSSTGFAGFQNLEEGSGKPLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNMGSEGGVGVPNRGKCEVGEGSDKKRKVSSVEEIEDASFDGSGLNYDSDDLTESNNNNKMEDINCKNGGNSSNANSTVTGVDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPTPPALPSRIKEELCPSSLPSPNGQSPRVEVRLREGRAVNIHMFCSRKPGLLLSAMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGFNGMI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4640g00002 545 Coils Coil 393 417 - -
Gabi4640g00002 545 MobiDBLite consensus disorder prediction 22 53 - -
Gabi4640g00002 545 MobiDBLite consensus disorder prediction 267 299 - -
Gabi4640g00002 545 MobiDBLite consensus disorder prediction 330 355 - -
Gabi4640g00002 545 FunFam BHLH transcription factor 350 418 - -
Gabi4640g00002 545 SMART finulus 360 409 IPR011598 GO:0046983
Gabi4640g00002 545 MobiDBLite consensus disorder prediction 282 299 - -
Gabi4640g00002 545 MobiDBLite consensus disorder prediction 1 53 - -
Gabi4640g00002 545 Gene3D - 347 418 IPR036638 GO:0046983
Gabi4640g00002 545 Pfam Helix-loop-helix DNA-binding domain 361 403 IPR011598 GO:0046983
Gabi4640g00002 545 MobiDBLite consensus disorder prediction 330 347 - -
Gabi4640g00002 545 CDD bHLH_AtAMS_like 357 422 - -
Gabi4640g00002 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 403 IPR011598 GO:0046983
Gabi4640g00002 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 421 IPR036638 GO:0046983
Gabi4640g00002 545 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 236 542 - -
Gabi4640g00002 545 CDD ACT_UUR-ACR-like 474 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4640g00002 Gabi-Chr4640 53349 56514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4640g00002 56 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.540 2.52e-122 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4640g00002 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4640g00002 - - cave:132174704 673.7