Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4636g00002 ATGACTTGTTGCTCTCATCTTTTCAGAAAAAAAGGGTCTTCGTCAGCCATACGATTAAATGGAGTTGATATAGATATTTCAGAAATTCAGAATGTGAATATTTACACTCACAAAGAATTGCGAATTGCCACTGAAGGTTTTAGTCCCGCAAACAAGATAGGGCAGGGAGGTTTTGGATCTGTCTATAAGGGAAAGCTGAGAAATGGTTCTCTGGTAGCTCTAAAGGTTTTATCAGCTGAATCAAATCAAGGGGTCCTGGAATTCTTGACAGAAATCAAGGTTATCTCTAGTATAGAGCATGAGAATCTAGTGAAGTTGTATGGATGCTGTGTGGAGAAAAACCACAGGATTTTGGTATATGGCTATCTTGAGAATAATAGCCTAGCACAAACACTTTTAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACTCATATTAGTACACGTGTTGCTGGAACAGCTGGTTATGTGGCACCTGAATATGCAATTAGAAATCAAGTGACAAGAAAATCAGATATCTATAGTTTTGGAGTTCTACTACTGGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTGGAAGAACAGTATCTTCTTACGAGGGCATGGGATTTGTATGAGAGAGGGAACCTAGAAAGACTGGTGGATCCTTTTCTAGATGGAGACTTCAATGTTGAGGAGGCAGTTAAGTTTTGCAAGATTAGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGGCCATCTATGTCCACTGTGCTTGACATGCTAATTGGGGGAAAATATGTGAGTGATGAGAATATGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCATGGTTGAAGAAGGGAAACAAAAAGGCAAGGCTGAATTGGATAGTACATCTTTGTTGGCTGGTTCAGGGAAGCAAGATGATTCATCTTCATCAGGAACGGTGAGCTCTTTTGCTACCATGACCTTCACTGCAATTTGTGATCGAAGCAATTAA 1005 0.403 MTCCSHLFRKKGSSSAIRLNGVDIDISEIQNVNIYTHKELRIATEGFSPANKIGQGGFGSVYKGKLRNGSLVALKVLSAESNQGVLEFLTEIKVISSIEHENLVKLYGCCVEKNHRILVYGYLENNSLAQTLLDFGLAKLIPPNLTHISTRVAGTAGYVAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWDLYERGNLERLVDPFLDGDFNVEEAVKFCKISLLCTQDSPQLRPSMSTVLDMLIGGKYVSDENMTKPGMIFEFVEAMVEEGKQKGKAELDSTSLLAGSGKQDDSSSSGTVSSFATMTFTAICDRSN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4636g00002 334 FunFam cold-responsive protein kinase 1 19 122 - -
Gabi4636g00002 334 SUPERFAMILY Protein kinase-like (PK-like) 30 269 IPR011009 -
Gabi4636g00002 334 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gabi4636g00002 334 Gene3D Transferase(Phosphotransferase) domain 1 131 288 - -
Gabi4636g00002 334 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 134 294 - -
Gabi4636g00002 334 ProSiteProfiles Protein kinase domain profile. 47 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4636g00002 334 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Gabi4636g00002 334 Pfam Protein tyrosine and serine/threonine kinase 51 158 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4636g00002 Gabi-Chr4636 16948 25829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4636g00002 25 278 Receptor kinase-like Gene Family AT1G56120 40.895 1.44e-62 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4636g00002 PK_Tyr_Ser-Thr 4.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4636g00002 - - gmx:100797257 458.373