Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4636g00001 ATGACTTGTTGCTCTCATCTTTTCAGAAAAAAAGGGTCTTCGTCAGCCATACGATTAAATGGAGTTGATATAGATATTTCAGAAATTCAGAATGTGAATATTTACACTCACAAAGAATTGCGAATTGCCACTGAAGGTTTTAGTCCCGCAAACAAGATAGGGCAGGGAGGTTTTGGATCTGTCTATAAGGGAAAGCTGAGAAATGGTTCTCTGGTAGCTCTAAAGGTTTTATCAGCTGAATCAAATCAAGGGGTCCTGGAATTCTTGACAGAAATCAAGGTTATCTCTAGTATAGAGCATGAGAATCTAGTGAAGTTGTATGGATGCTGTGTGGAGAAAAACCACAGGATTTTGGTATATGGCTATCTTGAGAATAATAGCCTAGCACAAACACTTTTAGGTGGAGGCCATAGTAGCATCCAATTCAATTGGCATGTACGAAGGAACATTTGCATAGGTGTTGCCAGGGGCCTTGCATTTCTTCATGAGGAGGTTCGCCCACATATTATTCATAGAGACATAAAAGCAAGCAATGTATTACTTGACAAAGACCTTCAACCTAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACTCATATTAGTACACGTGTTGCTGGAACAGCTGGTTATGTGGCACCTGAATATGCAATTAGAAATCAAGTGACAAGAAAATCAGATATCTATAGTTTTGGAGTTCTACTACTGGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTGGAAGAACAGTATCTTCTTACGAGGGCATGGGATTTGTATGAGAGAGGGAACCTAGAAAGACTGGTGGATCCTTTTCTAGATGGAGACTTCAATGTTGAGGAGGCAGTTAAGTTTTGCAAGATTAGTCTTCTTTGCACACAGGATTCTCCTCAGCTCCGGCCATCTATGTCCACTGTGCTTGACATGCTAATTGGGGGAAAATATGTGAGTGATGAGAATATGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCATGGTTGAAGAAGGGAAACAAAAAGGCAAGGCTGAATTGGATAGTACATCTTTGTTGGCTGGTTCAGGGAAGCAAGATGATTCATCTTCATCAGGAACGGTGAGCTCTTTTGCTACCATGACCTTCACTGCAATTTGTGATCGAAGCAATTAA 1176 0.4048 MTCCSHLFRKKGSSSAIRLNGVDIDISEIQNVNIYTHKELRIATEGFSPANKIGQGGFGSVYKGKLRNGSLVALKVLSAESNQGVLEFLTEIKVISSIEHENLVKLYGCCVEKNHRILVYGYLENNSLAQTLLGGGHSSIQFNWHVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYVAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWDLYERGNLERLVDPFLDGDFNVEEAVKFCKISLLCTQDSPQLRPSMSTVLDMLIGGKYVSDENMTKPGMIFEFVEAMVEEGKQKGKAELDSTSLLAGSGKQDDSSSSGTVSSFATMTFTAICDRSN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4636g00001 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gabi4636g00001 391 FunFam cold-responsive protein kinase 1 19 122 - -
Gabi4636g00001 391 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4636g00001 391 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Gabi4636g00001 391 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Gabi4636g00001 391 SMART serkin_6 47 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4636g00001 391 CDD STKc_IRAK 53 318 - -
Gabi4636g00001 391 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4636g00001 391 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 351 - -
Gabi4636g00001 391 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Gabi4636g00001 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gabi4636g00001 391 SUPERFAMILY Protein kinase-like (PK-like) 27 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4636g00001 Gabi-Chr4636 16948 25829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4636g00001 23 332 Receptor kinase-like Gene Family AT1G07650 54.921 1.09e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4636g00001 Pkinase 8.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4636g00001 - - gmx:100797257 652.129