Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4634g00098 ATGTATGTCGAGATGGAAAGCTGCATGAGCAGCAACAACAACAACAACAACAACCAGTGGAGAGCTGAGGAAGCCATTGGTGGCAACGCTAAAGCTCTTCAAACCCTCAGAGAACTCATCATATTCCCTCTCCACTTCTCTCACCATGCACACAAGCTTGGCATCAAATGGCCAAGAGGGTTGTTGCTGTACGGTCCACCAGGCACGGGGAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAATGCGAGGCACATTTGACAATTATAAATCCATACTCTGTTCATAGACCACATGCTGGTGAAAGTGAGAGAATTCTCCGTGAAGCATTTTCAGAGGCATCATCTCATGCAGCCTTGGGCAAACCATCAGTGATCTATATTGATGAAATAGATGCACTCTGTCCCCGTCGAGATTCCAAAAGGGAGCAAGATGTCCGAGTTGCCTCCCAACTCTTTAAACTGATGGACTCAAATAAACCAACCTCTTCTACACCAGGGGTAGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCCTTAAGAAGGTATGGACGATTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAGGAGCGCTTTCAAATTCTAATGCTGTATACAAAGAAGATTCCCTTGGATCCCAGTCTTGACTTAAAATCCATTGCTGCATCATGCAATGGGTATGTTGGAGCTGATTTGGAAGCTTTGTGTCGTGAAGCTACCATCTTTGCAGTTGAGAGGTCCTCAAATACAAATGAAGATGCTAGTATTTTCAGTTTAACAATGGAAGATTGGAAGAAAGCAAGGTCTGTTGTTGGTCCAAGTATAACAAGAGGTGTTACGGTGGAAATTCCCAAAGTGACTTGGGAAGACATCGGGGGATTAAAAGAATTGAAGAAAAAGCTCCAGAAAGCTGTTGAATGGCCTATTAAGCATTCTGCTGCATTTTCAAGATTGGGAATATCCCCTGTTCGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACATGCTGCCCAAGCTTCTTTCTTTTCCTTGAGTGGTGCAGAGTTGTATTCAATGTATGTTGGAGAGGGGGAAGCTTTGCTTCGTAAAACATTTCAAAGAGCGCGGCTTGCAGCACCCAGTATAATATTCTTTGATGAGGCTGACGTGGTAGCTGTCAAACGGGGTGATAGTTCAAGCAATAGTGCTACGGTTGGAGAGAGGCTTTTATCCACTCTGCTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTTTGGCAGCTACAAATCGCCCTTATGCAATTGATGCTGCACTTATGCGTCCTGGACGTTTTGATCTGGTACTGTATGTGCCACCACCTGATTTGGAGGGTCGATATGAGATACTGTGTGTGCATACACGTAAGATGAAAACAGGGAAAGATGTTGATTTTAGAAGACTAGCAGAAGATACTGAGCTCTTCACAGGTGCTGAACTGGAAGGGTTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTACTGTTGTCTGTGACCGTCATTTCCAGATTGTGAAGAATTCTTTAAAACCAGCATTAACAAAAGCTGAAATTGATTCCTACTCATCTTTTATGAAGACTTCATCTCAAGCTTTGCCCCGACATTTTGATTCAGGTTTGAAACCGAATAAGAAAAAAAAGAAGTTGGGTCCTTTGTCGTTGGTTAAGATTGGGGTTGTCAGTTGTATGTTCCTTGCTGCAGCTAAATACTATATCATGCATGCAGATCAAACTCTACATGATATAGCTACATGA 1839 0.4339 MYVEMESCMSSNNNNNNNQWRAEEAIGGNAKALQTLRELIIFPLHFSHHAHKLGIKWPRGLLLYGPPGTGKTSLVRAVVRECEAHLTIINPYSVHRPHAGESERILREAFSEASSHAALGKPSVIYIDEIDALCPRRDSKREQDVRVASQLFKLMDSNKPTSSTPGVVVVASTNRVDAIDPALRRYGRFDAEIEVTVPNEEERFQILMLYTKKIPLDPSLDLKSIAASCNGYVGADLEALCREATIFAVERSSNTNEDASIFSLTMEDWKKARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQKAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVVAVKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEGRYEILCVHTRKMKTGKDVDFRRLAEDTELFTGAELEGLCKEAGIVALREDISATVVCDRHFQIVKNSLKPALTKAEIDSYSSFMKTSSQALPRHFDSGLKPNKKKKKLGPLSLVKIGVVSCMFLAAAKYYIMHADQTLHDIAT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4634g00098 612 Gene3D - 198 280 - -
Gabi4634g00098 612 SMART AAA_5 57 199 IPR003593 GO:0016887
Gabi4634g00098 612 SMART AAA_5 327 466 IPR003593 GO:0016887
Gabi4634g00098 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 550 IPR027417 -
Gabi4634g00098 612 PANTHER AAA-FAMILY ATPASE 18 556 - -
Gabi4634g00098 612 ProSitePatterns AAA-protein family signature. 434 452 IPR003960 GO:0005524|GO:0016887
Gabi4634g00098 612 CDD RecA-like_CDC48_NLV2_r1-like 25 195 - -
Gabi4634g00098 612 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 412 431 - -
Gabi4634g00098 612 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 65 84 - -
Gabi4634g00098 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 277 IPR027417 -
Gabi4634g00098 612 FunFam Cell division control protein 48-B-like protein 281 465 - -
Gabi4634g00098 612 FunFam Cell division control protein 48 homolog B 198 280 - -
Gabi4634g00098 612 FunFam spermatogenesis-associated protein 5-like protein 1 465 551 - -
Gabi4634g00098 612 Pfam ATPase family associated with various cellular activities (AAA) 331 463 IPR003959 GO:0005524|GO:0016887
Gabi4634g00098 612 Pfam ATPase family associated with various cellular activities (AAA) 61 195 IPR003959 GO:0005524|GO:0016887
Gabi4634g00098 612 Gene3D - 9 196 IPR027417 -
Gabi4634g00098 612 Gene3D - 281 465 IPR027417 -
Gabi4634g00098 612 Pfam AAA+ lid domain 220 259 IPR041569 -
Gabi4634g00098 612 Pfam AAA+ lid domain 486 531 IPR041569 -
Gabi4634g00098 612 Gene3D - 466 557 - -
Gabi4634g00098 612 FunFam Cell division control protein 48 homolog B 18 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4634g00098 Gabi-Chr4634 822120 830491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4634g00098 262 577 Calmodulin-binding Proteins AT3G56690 42.633 3.30e-79 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4634g00098 - - gmx:100814288 1018.07