Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4634g00042 | ATGAGAAGACGTTCGAGCAGAACTATCTATGTTGGGAATCTACCTGGCGATATTCGTGAAAAAGAAGTGGAAGATTTGTTTTACAAGTACGGACACATAACTCACATTGACCTTAAGGTTCCACCAAGGCCCCCAGGTTATGCATTTGTGGAGTTTGAAGATGCTCAAGATGCTGAAGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCTTGCACATGGGGGGCGCGGTCCTTCATCTTCAAGAGACCGATATAGTAGTCGTAGCAATGGCCGGGCTGGACATGGGGTATCTAAGCGTTCTGAATTTCGTGTTCTAGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGACCTTAAAGATCACATGCGAAAGGCGGGGGATGTTTGCTTCTCCCAAGTTTTTCATGATGGAAGAGGTACAACAGGTATTGTGGATTTCACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCAGAGTTCAAGAATGCATTTTCTAGGGGTTATGTTCGTGTAAGGGAATATGATTCGAGAAGGGACTCCTCTAGAAGTCCTAGTCGTGACCGATCTCATTCTAGGGGAAGAAGCTATAGTCGCAGTCGTAGCCAGAGTCACAGTCGGGGCCGGAGCCAAAGTAAATCTCCAAAGGGTAAATCTTCGCAGCGTTCACCAGTTAAATCTCCTTTAATATCTCCTCCTCGTTCACATTCGAGATCAAAGTCCCGTTCTTTATCAGGATATGGATACTTGAAGCAAACTTGGAATTGGAAATTAGAAACTTGGTGGGATTTGGTTCAGTTGCCTGGAACTCAATTTGTTATAGAGGTATGGTATTTTTTAGATGGGTGGCTTTGGATACCTTCAAAGTACATCTGTTCTAATGCTTTTAGCACGTAA | 933 | 0.4459 | MRRRSSRTIYVGNLPGDIREKEVEDLFYKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVELAHGGRGPSSSRDRYSSRSNGRAGHGVSKRSEFRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDFTNYDDMKYAIKKLDDSEFKNAFSRGYVRVREYDSRRDSSRSPSRDRSHSRGRSYSRSRSQSHSRGRSQSKSPKGKSSQRSPVKSPLISPPRSHSRSKSRSLSGYGYLKQTWNWKLETWWDLVQLPGTQFVIEVWYFLDGWLWIPSKYICSNAFST | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4634g00042 | 310 | Gene3D | - | 111 | 188 | IPR012677 | - | |
| Gabi4634g00042 | 310 | MobiDBLite | consensus disorder prediction | 186 | 207 | - | - | |
| Gabi4634g00042 | 310 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
| Gabi4634g00042 | 310 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
| Gabi4634g00042 | 310 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 5 | 253 | - | - | |
| Gabi4634g00042 | 310 | MobiDBLite | consensus disorder prediction | 80 | 105 | - | - | |
| Gabi4634g00042 | 310 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 1 | 110 | - | - | |
| Gabi4634g00042 | 310 | FunFam | serine/arginine-rich splicing factor SR34A-like | 111 | 188 | - | - | |
| Gabi4634g00042 | 310 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Gabi4634g00042 | 310 | MobiDBLite | consensus disorder prediction | 215 | 255 | - | - | |
| Gabi4634g00042 | 310 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
| Gabi4634g00042 | 310 | MobiDBLite | consensus disorder prediction | 186 | 255 | - | - | |
| Gabi4634g00042 | 310 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 176 | IPR035979 | GO:0003676 | |
| Gabi4634g00042 | 310 | Gene3D | - | 2 | 110 | IPR012677 | - | |
| Gabi4634g00042 | 310 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
| Gabi4634g00042 | 310 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Gabi4634g00042 | 310 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Gabi4634g00042 | 310 | SMART | rrm1_1 | 112 | 185 | IPR000504 | GO:0003723 | |
| Gabi4634g00042 | 310 | MobiDBLite | consensus disorder prediction | 88 | 102 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4634g00042 | Gabi-Chr4634 | 357034 | 362545 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4634g00042 | 8 | 195 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.381 | 3.75e-07 | 49.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4634g00042 | K12890 | - | cave:132187262 | 373.244 |