Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4634g00041 ATGAGAAGACGTTCGAGCAGAACTATCTATGTTGGGAATCTACCTGGCGATATTCGTGAAAAAGAAGTGGAAGATTTGTTTTACAAGTACGGACACATAACTCACATTGACCTTAAGGTTCCACCAAGGCCCCCAGGTTATGCATTTGTGGAGTTTGAAGATGCTCAAGATGCTGAAGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCTTGCACATGGGGGGCGCGGTCCTTCATCTTCAAGAGACCGATATAGTAGTCGTAGCAATGGCCGGGCTGGACATGGGGTATCTAAGCGTTCTGAATTTCGTGTTCTAGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGACCTTAAAGATCACATGCGAAAGGCGGGGGATGTTTGCTTCTCCCAAGTTTTTCATGATGGAAGAGGTACAACAGGTATTGTGGATTTCACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCAGAGTTCAAGAATGCATTTTCTAGGGGTTATGTTCGTGTAAGGGAATATGATTCGAGAAGGGACTCCTCTAGAAGTCCTAGTCGTGACCGATCTCATTCTAGGGGAAGAAGCTATAGTCGCAGTCGTAGCCAGAGTCACAGTCGGGGCCGGAGCCAAAGTAAATCTCCAAAGGGTAAATCTTCGCAGCGTTCACCAGTTAAATCTCCTTTAATATCTCCTCCTCGTTCACATTCGAGATCAAAGTCCCGTTCTTTATCAGGATCAAGATCAAGATCCAGGTCTCCTGTGCCATTGCGTAATAAAAGCCCAAAAAGGCACAGTCCTAGCAGAAGCCCAAGTAGGAGCAGAAGCAGAAGCAAGAGTTTGTCCCGGTGA 888 0.4662 MRRRSSRTIYVGNLPGDIREKEVEDLFYKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVELAHGGRGPSSSRDRYSSRSNGRAGHGVSKRSEFRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDFTNYDDMKYAIKKLDDSEFKNAFSRGYVRVREYDSRRDSSRSPSRDRSHSRGRSYSRSRSQSHSRGRSQSKSPKGKSSQRSPVKSPLISPPRSHSRSKSRSLSGSRSRSRSPVPLRNKSPKRHSPSRSPSRSRSRSKSLSR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4634g00041 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gabi4634g00041 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gabi4634g00041 295 MobiDBLite consensus disorder prediction 186 207 - -
Gabi4634g00041 295 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 292 - -
Gabi4634g00041 295 CDD RRM2_SF2_plant_like 111 186 - -
Gabi4634g00041 295 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Gabi4634g00041 295 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Gabi4634g00041 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gabi4634g00041 295 Gene3D - 111 188 IPR012677 -
Gabi4634g00041 295 MobiDBLite consensus disorder prediction 80 105 - -
Gabi4634g00041 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gabi4634g00041 295 CDD RRM1_SF2_plant_like 8 79 - -
Gabi4634g00041 295 Gene3D - 2 110 IPR012677 -
Gabi4634g00041 295 MobiDBLite consensus disorder prediction 215 268 - -
Gabi4634g00041 295 MobiDBLite consensus disorder prediction 269 284 - -
Gabi4634g00041 295 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gabi4634g00041 295 SMART rrm1_1 112 185 IPR000504 GO:0003723
Gabi4634g00041 295 MobiDBLite consensus disorder prediction 186 295 - -
Gabi4634g00041 295 MobiDBLite consensus disorder prediction 88 102 - -
Gabi4634g00041 295 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4634g00041 Gabi-Chr4634 356237 362544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4634g00041 8 195 Eukaryotic Initiation Factors Gene Family AT4G34110 25.381 5.13e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4634g00041 K12890 - gmx:100789847 371.703