Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4634g00015 ATGAAGTTCTGCAAGACTTACCAGGAGTACATGCAAAGCCAGGAGCATGAGCTCCCTGGTGTTGGCTTCAAGAACCTCAAAAAGATTATGAAGAAATGTAGTAGAGATTGCCAATCCCTTAATGATTCCGTGGACATCAGAACCTGCCCTAATCAATGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTAGATGAAATGTCAGATATAATGGGGTGCTTTAATCAGCGTGCGCAGAAAGTGCTGGAACTACATCTTGCTTCTGGCTTCAAAAAGTACTTTCTCATGTTGAAAGGAAAGTTACGAGGAAATCATACTGCTCTAATTCAAGAAGACAAAGATTTAGTCACATATGCACTGATAAATGCCACTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAAGTCCAGACTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTTGTGGCCTTACACATCAACTTAAATGCAACTAAAGTCAAGTCAAAGAAGGCACCTGCTTTTTTTGATGTATGTTACCTCACATTTAAGGATGAAAAACCATCACTTACTTGTGAGCTCTTTGGTTCCATCAAAATTGATATTGACTTGACTTGCTCTGTATGCTTGGATACGGTGTTCGATCCAATTGCTCTGACTTGCGGCCACATATTCTGCTACAGCTGTGCTTGCTCAGCTGCATCAGTAACTATTGTCGATGGACTTAAGGCAGCAGATCCTAGAGAGAAATGTCCTCTATGCCGAGAGAGAGGAGTTTATGAAGGTGCTGTGCACTTGGAAGAATTGAATATTCTATTAGCTCAAAGGTATGATACCTACTGGATGGAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTTAAGCAAATGAAGGAGTATTGGGAAGCGCAGTGTAGGGCGGCCATGGGCGTCTAG 966 0.4224 MKFCKTYQEYMQSQEHELPGVGFKNLKKIMKKCSRDCQSLNDSVDIRTCPNQCPVCDGTFFPSLLDEMSDIMGCFNQRAQKVLELHLASGFKKYFLMLKGKLRGNHTALIQEDKDLVTYALINATAIRKILKKYDKIHYSKQGQLFKSQVQTMHKEILQSPWLCELVALHINLNATKVKSKKAPAFFDVCYLTFKDEKPSLTCELFGSIKIDIDLTCSVCLDTVFDPIALTCGHIFCYSCACSAASVTIVDGLKAADPREKCPLCRERGVYEGAVHLEELNILLAQRYDTYWMERLQMERVERVKQMKEYWEAQCRAAMGV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4634g00015 321 Pfam Zinc finger, C3HC4 type (RING finger) 214 267 - -
Gabi4634g00015 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 319 IPR013083 -
Gabi4634g00015 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 320 IPR033326 -
Gabi4634g00015 321 CDD SPX_BAH1-like 2 144 - -
Gabi4634g00015 321 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Gabi4634g00015 321 ProSiteProfiles Zinc finger RING-type profile. 217 266 IPR001841 -
Gabi4634g00015 321 ProSiteProfiles SPX domain profile. 1 148 IPR004331 -
Gabi4634g00015 321 SUPERFAMILY RING/U-box 210 268 - -
Gabi4634g00015 321 CDD RING-HC_BAH1-like 208 280 - -
Gabi4634g00015 321 SMART ring_2 217 265 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4634g00015 Gabi-Chr4634 244843 248091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4634g00015 214 266 C3H Transcription Factor Family AT4G28270 37.931 1.65e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4634g00015 K16275 - gmx:100787904 527.324