Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4634g00013 ATGTCTTCTGCAGCTGCAACTTGGGTCACGTCTCTCCAATGTTCACCCTCAGAGGAAACATTTCTCTCAACTTCAAATCTACCTCAGTGGCTGAGATTCATTTTCCTCTCACCATGTCCTCAGAGAGCTCTATTTTCTGCTGTTGACGCACTACTCCTTCTTACCCTCTTTGTGTTTGCTATCACAAAGCTCTATTCAAGGTTCACTTCCAATGTCAACACCAACTCCGAGCTCAACAAGCCCCTTATCAGAAATACCAGAGGTTCTGACAGAACAACTATATGGTTTAAGCTAACTCTAACTGCAACGGTTGTTTTGACTATATTGTACCTGGTCGCTTGCATTCTGGTCTTCAGCAGTTCCACCCAGTTGCCATGGAAGCAAGTTGATGGACTATTTTGGTTGGTTCAGACCATAACACAACTAGTCCTTGCAATCTTAATCATTCATGAGAAAAAATTTGAAGCTGTTGCTCACCCAATATCGCTTCGAATATACTGGATTGCGAATTTCATCATCGTTTCTTTGTTCACAGCATCTGGGGTTATACGTTTGGTCTCTGTGGAAGTGGAAGAAGGCAAGCACTTCAGCTTTATGGTGGATGACATAGTCTCTTTCATTTCTCTCCCTCTGTCGCTTTTTCTGCTTTGTGTTGCGATTAAAGGATCCACTGGGATTAAGTCAAGGGAAGAAACGCGACCGCTTATTGATGAGGAAACCAAACTATATGATCCTAATCTGGACAAATCCAACGTTACTGGATTTGCATCAGCTTCTTTACTATCCAAGGCCTTTTGGATTTGGATAAACCCCTTGTTGAGTAAAGGGTACCAGTCACCATTGAAGATTGAGGAAATTCCATCCCTTTCACCACAGCATAGAGCTGAGAGGATGTCAGTTATATTTGAATCAAAATGGCCTAAATCAGATGAGAGGTCGAAGCACCCCGTTCGAACCACGTTGCTTCGGTGCTTCTGGAAGGACATAGCCTTCACTGCTTTCCTTGCTGTTATTCGGCTGAGTGTCATGTTTGTAGGGCCAGTTCTCATTCAAAGTTTTGTTGATTTCACTGCAGGGAAGGGTAGCTCTGTGTATGAAGGATACTACCTCGTGTTGATTCTCCTTTGTTCCAAATTTGTAGAAGTTTTGACCACTCACCATTTCAACTTCAATTCTCAGAAGCTTGGGATGCTTATAAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGTTGAGGCTATCATGCTCTGCAAGGCAGGATCATGGTGTTGGGCCTATTGTGAATTACATGGCTGTTGATACCCAGCAACTCTCTGACATGATGCTTCAACTTCATGCCGTGTGGATGATGCCATTTCAAGTTGGCATTGGTTTAATTTTGCTTTACAATTGCCTAGGTGCCTCAGTGGTTACGGCCTTGATTGGACTTCTTGGTGTTCTTGCGTTTATTGTTGTGACTACTCGAAAGAACAAGGGTTACCAATTTAATGCAATGATGAATCGTGATTCTAGGATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTTATCAAGTTCCAGGCTTGGGAGGAGCATTTCAACGAGAGAATTTTGGATTTCCGTAAGTCAGAGTTTGGGTGGCTATCCAAGTTTATGTACTCAATTTGTGGCAATATTATTGTGTTGTGGAGCACACCGTTATTGATATCAACATTCACATTTGGTACGGCGATTTTGCTTGGAGTTCCACTTGATGCAGGGACGGTGTTCACCACCACAACTGTGTTCAAGATCCTACAGGAACCTATTAGGACATTTCCACAGTCTATGATATCTCTTTCACAAGCAATGGTATCACTTGGGAGGTTAGATAGGTACATGTCTAGCAGGGAATTGTCAATTGATTCAGTTGAGAGAGCTGAAGGTTGTGGTGGACCAACTGTTGTGGAGGTTAAAGATGGAACCTTTAGCTGGGATGATGATGGCCAAGAGCAGGACTTGAAAAATATCAATTTGGAGATTAACAAGGGGGAGCTCACAGCTATTGTTGGGACTGTAGGGTCTGGAAAGTCTTCTCTCCTTGCATCAATTCTTGGTGAGATGCACAAAATTTCTGGAAAGGTTCAAGTTTGTGGGAGTACTGCTTATGTTGCACAGACATCTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTTGGTCGACCAATGGACAGACGGCAGTACAATGAAGTTGTCAGGGTTTGTTGCTTGGAGAAAGACTTGGAAATGATGGAGTTTGGGGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTAAGTGGGGGCCAGAAGCAGCGTATCCAACTTGCCAGGGCTGTGTATCAAGACTGTGATATATATCTTCTTGACGATGTCTTCAGTGCTGTTGATGCACACACTGGCACTGAAATTTTTAAGGAATGTGTGAGGGGAGTTCTAAAAGGCAAGACCATTATTCTTGTAACACATCAAGTAGACTTCCTACACAATGTGGATCTTATAATGGTGATGAGGGATGGAACGATAGTCCAATCAGGGAAGTACAATGATCTACTCGATTCTGGATTGGATTTTAGTGTTCTCGTAGCAGCACATGAGACCTCTATGGAACTAGTAGAACAAGGTGCCGTTATGCCTGGTGAAAATTTGAACAAACCAATTAAATCTCCGAAGGCAGTAGCAAATGGTGAAAGCAATTCTCTTGAACAACCCAAGACTGGCAAGGAAAGTTCTAAACTCATCAAAGAAGAGGAGAGAGAGACTGGGAAAGTTAACTTACGTATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTACAGGAATACTCTTTGTTTCTTTGTTGTGGCAAGCATCTATGATGGCAAGTGATTATTGGCTTGCATATGAAACCTCAGAAGACCGTGCTCAATCGTTTAATCCTTCTCTGTTTATTTCCGTCTATGCAATTATTTCTGTAGTTTCAGTTGTCTTGATAGTGCTAAGATCCTACTCTGTTACAATCTTGGGGTTAAAGACAGCACAGATTTTCTTCTCTCAAATTCTTCATAGCATCTTGCATGCCCCCATGTCTTTCTTTGACACTACTCCATCGGGGAGAATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATATCTTTATCCCCTTGTTCTTTAACTTTGTGGTGGCCATGTACATTACAGTGATCAGCATCTTCATAATCACATGTCAAAATTCTTGGCCTACAACTTTCTTGCTAATACCTCTTGTTTGGTTGAACTTATGGTACCGGGGTTATTTTCTTTCTTCATCTCGTGAGTTAACTCGCCTGGACTCAATTACAAAGGCACCTGTCATTCATCATTTCTCTGAAAGCATTTCCGGGGTCATGACAATCCGTGCATTCAAAAAGCAGAAGGAATTTTGTGAAGAAAATATTAAACGGGTGAATGCTAATTTGCGAATGGATTTCCACAACTTCAGTTCTAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAGCCTTAGTCTTTTGCATTTCTGCTATGTTCATGATCATGTTACCCAGCAGTATCATAAAGCCAGAAAATGTTGGCTTATCTCTCTCTTATGGATTGTCATTAAATGCCGTGATGTTCTGGGCTATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAGCAGTTCACAAATATTCCATCAGAAGCAGCATGGAAACTTAAGGATCGTATGCCTCCTTCAAATTGGCCTGGTCAAGGCAATGTTGACATCAAAGACTTGCAGGTCAGATATCGTCCAAACACTCCATTGGTTCTTAAAGGCATTACTTTAAGCATTAGTGGGGGAGAAAAGGTTGGAGTTGTTGGTCGAACTGGTAGTGGAAAATCAACTTTAATTCAAGTGTTCTTCAGGCTGGTGGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATATCCGCCTTAGGGCTTCATGATCTTAGATCTCGGTTTGGTATCATCCCTCAGGAGCCTGTACTTTTTGAAGGAACTGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGATGAAGAGATATGGAAGAGTTTGGAACGTTGTCAACTAAAAGATGCAGTGGCTACTAAGCCTGAGAAACTTGACTCTTCAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGGAGGGTTATGCTTAAGCAAAGCAGGCTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGCTGTAATTCAGAAGATCATCCGAGAGGACTTTGCAGCCCGTACCATCATCAGCATTGCTCATAGAATACCAACAGTCATGGACTGTGATAGAGTTCTAGTTGTAGATGCAGGGCGAGCTAGAGAATTTGACAAGCCATCCAACTTGCTCCAGAGGCCATCGCTCTTTGGGGCATTAGTTCAAGAATATGCCAACCGCTCCACTGGACTTTAA 4515 0.4235 MSSAAATWVTSLQCSPSEETFLSTSNLPQWLRFIFLSPCPQRALFSAVDALLLLTLFVFAITKLYSRFTSNVNTNSELNKPLIRNTRGSDRTTIWFKLTLTATVVLTILYLVACILVFSSSTQLPWKQVDGLFWLVQTITQLVLAILIIHEKKFEAVAHPISLRIYWIANFIIVSLFTASGVIRLVSVEVEEGKHFSFMVDDIVSFISLPLSLFLLCVAIKGSTGIKSREETRPLIDEETKLYDPNLDKSNVTGFASASLLSKAFWIWINPLLSKGYQSPLKIEEIPSLSPQHRAERMSVIFESKWPKSDERSKHPVRTTLLRCFWKDIAFTAFLAVIRLSVMFVGPVLIQSFVDFTAGKGSSVYEGYYLVLILLCSKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLILLYNCLGASVVTALIGLLGVLAFIVVTTRKNKGYQFNAMMNRDSRMKAVNEMLNYMRVIKFQAWEEHFNERILDFRKSEFGWLSKFMYSICGNIIVLWSTPLLISTFTFGTAILLGVPLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQAMVSLGRLDRYMSSRELSIDSVERAEGCGGPTVVEVKDGTFSWDDDGQEQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHKISGKVQVCGSTAYVAQTSWIQNGTIEENILFGRPMDRRQYNEVVRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGVLKGKTIILVTHQVDFLHNVDLIMVMRDGTIVQSGKYNDLLDSGLDFSVLVAAHETSMELVEQGAVMPGENLNKPIKSPKAVANGESNSLEQPKTGKESSKLIKEEERETGKVNLRIYKLYCTEAFGWWGITGILFVSLLWQASMMASDYWLAYETSEDRAQSFNPSLFISVYAIISVVSVVLIVLRSYSVTILGLKTAQIFFSQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDIFIPLFFNFVVAMYITVISIFIITCQNSWPTTFLLIPLVWLNLWYRGYFLSSSRELTRLDSITKAPVIHHFSESISGVMTIRAFKKQKEFCEENIKRVNANLRMDFHNFSSNAWLGFRLELLGALVFCISAMFMIMLPSSIIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKMVSVERIKQFTNIPSEAAWKLKDRMPPSNWPGQGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLERCQLKDAVATKPEKLDSSVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRAREFDKPSNLLQRPSLFGALVQEYANRSTGL 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4634g00013 1504 Coils Coil 1504 1504 - -
Gabi4634g00013 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1496 IPR003439 GO:0005524
Gabi4634g00013 1504 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 256 1497 - -
Gabi4634g00013 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 947 1225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4634g00013 1504 CDD ABCC_MRP_domain2 1260 1480 - -
Gabi4634g00013 1504 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524|GO:0016887
Gabi4634g00013 1504 SUPERFAMILY ABC transporter transmembrane region 321 623 IPR036640 GO:0005524|GO:0016020
Gabi4634g00013 1504 CDD ABC_6TM_ABCC_D1 331 618 IPR044746 GO:0140359
Gabi4634g00013 1504 Pfam ABC transporter 662 795 IPR003439 GO:0005524
Gabi4634g00013 1504 CDD ABC_6TM_ABCC_D2 945 1237 IPR044726 GO:0140359
Gabi4634g00013 1504 Gene3D - 626 881 IPR027417 -
Gabi4634g00013 1504 MobiDBLite consensus disorder prediction 891 917 - -
Gabi4634g00013 1504 Pfam ABC transporter transmembrane region 331 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4634g00013 1504 Pfam ABC transporter transmembrane region 950 1190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4634g00013 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4634g00013 1504 FunFam ABC transporter C family member 3 1245 1496 - -
Gabi4634g00013 1504 Pfam ABC transporter 1279 1427 IPR003439 GO:0005524
Gabi4634g00013 1504 SUPERFAMILY ABC transporter transmembrane region 942 1242 IPR036640 GO:0005524|GO:0016020
Gabi4634g00013 1504 FunFam ABC transporter C family member 4 627 885 - -
Gabi4634g00013 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 644 867 IPR003439 GO:0005524
Gabi4634g00013 1504 Gene3D - 1245 1494 IPR027417 -
Gabi4634g00013 1504 MobiDBLite consensus disorder prediction 896 910 - -
Gabi4634g00013 1504 CDD ABCC_MRP_domain1 644 844 - -
Gabi4634g00013 1504 Coils Coil 1133 1153 - -
Gabi4634g00013 1504 FunFam ABC transporter C family member 10 313 626 - -
Gabi4634g00013 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1495 IPR027417 -
Gabi4634g00013 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 861 IPR027417 -
Gabi4634g00013 1504 SMART AAA_5 1288 1472 IPR003593 GO:0016887
Gabi4634g00013 1504 SMART AAA_5 671 844 IPR003593 GO:0016887
Gabi4634g00013 1504 Gene3D ABC transporter type 1, transmembrane domain 315 625 IPR036640 GO:0005524|GO:0016020
Gabi4634g00013 1504 Gene3D ABC transporter type 1, transmembrane domain 908 1243 IPR036640 GO:0005524|GO:0016020
Gabi4634g00013 1504 FunFam ABC transporter C family member 5 908 1243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4634g00013 Gabi-Chr4634 227636 236023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4634g00013 644 860 Calmodulin-binding Proteins AT2G36910 31.760 2.38e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4634g00013 - K05666 gmx:100793361 2630.13