Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4634g00005 ATGGTTGAAACTAGACGCAGCTCCTCTTCTTCCAAGCGCTCTCTTTCTTCGCCTTCTTCTTCCACCGCCAAACGATCCAAGGTGTCCGAGGATGCCACATCCTCAACCCAGCCCTCGGCGGGAATTATCGCTCCGGTCAACGAATCTGGAACCGGGAATGAATCTGGGGAACCGGAGATACGGCCCTCTGATCTGCCGGAAACGGCGTCGTTGAAGGCTGTGGATGTTTGTGATGCGATGTTACCAGACAAGGAACCTTCTGTGCCCGTCGAAGGCGAGGATTTGGTGTCCCCTCAGTATATAGGTAAAACTGCGGAGAAATCAACGGTGGCCGTTGCCGGGGCAGCACAGGGTCGGTCGAAGAAACGCCCTACAAAATCGAGCCCTAAGACTGCGTGGGGGAAGCTCCTCTCTCAGTGGTCTCAGAATCCTCACCTGTCCATGTATGATCCTATCTACACTGTTGGTCAAGGCCGTCAGTGTAATTTATGGCTTAAAGACCCCACTGTCGGTAACATTTTATGCAAGTTGAGCCGCATAGAGCGTGGAGATTCGTCTGTTGCATTACTGGAAACCACAGGGGGTAAAGGTGCTGTTCAAGTCAATGGCAAGACTTATCGAAAGAATGCCAGTCAAATATTAAGCGGAGGTGATGAGGTGGTCTTTGGTTCATCGGGCAAGCATGCTTATATCTTTCAGCAGCTTACAAATGATAATATTGCTACTGCTGGTATAACTTCTCCTGTGAGTATTTTAGAAGCCCAGAGTACTCCAATAAATGGAATGCAAGTTGAGGCTAGATCTGGAGACCCTTCAGCTGTCGCAGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGATTTATCTCTCATTACACCTGCTAAAACTAGCAAGAATGTGCAACAGAACACTGATGTTTCATCACAACCTTCTGGCCACGGGGATGATATTCCAGACATTGAAGTGAAGGATACCATCAATAATGATGAACCAGCTGGAGTTTTTTCTGCTGATAAAGCTGTTCTTGCATCCTCTACCACTGTTAATGAAAATCCTAGCCTTGACAACTTGGATGTTGATTCCAATGTGAAAGAAGATGTTGGGAAGATGACTGCAACCTTACAATTGAGGCCATTATTGCGCATGCTTTCTGGGTCGCGTCAGGAATTTGATTTAAGGTCTACCATTTCCAAGATATTGGAAGAGCGAAGGGAATTAAAAGAACTCCTTAAAGATATTGATACCCCAACAATATTGGCTTCGACTAGACGGCAAGCATTTAAGGACAGTTTACAACAGAGAATTCTCAATGCTGAGAATATTGATGTTTCATTTGAAAGCTTCCCATATTATCTAAGTGATACGACAAAGAATGTTTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTCGGAAAATATGCTTCAGACCTCCCCTCAGTGTCCCCGCGGATATTGTTATCTGGTCCTGCAGGTTCTGAAATATATCAGGAAACATTGTCCAAGGCACTTGCGAAGCATTTTGGTGCCAGGCTACTGATTGTGGATTCTCTTTCACTGCCTGGTGGAACACCATTAAAGGAAGTTGATTCTGCTAAAGAAAGTTCAAGGCCTGAAAAATCATCTGTGTTTGCTAAGAGAAGTACCCAGGCTGCCACATTACAGCATAAGAAACCACTTTCTAGTGTTGATGCTGAAATTATGGGTGGATCCACATTAAGTTCTCATGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGTCACAACTCTTAAAACAGGTGATCGAGTAAGATTTGTTGGTAACTTTCCTTATGCTGTATCATCACTACAAAATTATCCTTCAAGGGGACCAAGCTATGGCTCCAGGGGCAAAGTTCTCCTTGCTTTTGAAGATAATGGGTCTTCAAAAATTGGCGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGCGAAGACGATCACGGGTTCTTTTGTTCTGCAAATCATTTACTACGGGTAGATGGTTCTGGAGGGGATGACATTGACAGAGTTGCAATTAATGAAATCTTTGAGGTTGCCTCAAATCAGAGTAAAAGTGGAGCACTGGTCTTGTTCATTAAAGATATAGAAAAGGCAATGGTTGGGAACTCTGAAGTTTTGAAAAGTAAATTTGAAAGCTTGCCGAAGAATGTTGTGGTAATTGGCTCACATACCCAGCTCGACAATCGTAAGGAGAAGACCCAACCTGGCGGCCTTCTGTTTACGAAGTTTGGGAGTAATCAGACAGCACTTCTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAATAATGAAGCAACTTGGTCGCCTTTTCCCTAACAGAGTAACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGATTGGAAGCAGCAGTTAGAACGTGACGTTGAAACCATGAAAGCTCAGTCCAATGTTGTTAGCATTCGCTTTGTTCTCAACAGAATTGGACTGGATTGCCCTGACCTTGAGACACTCTGCATCAAAGATCAAACCCTAACAACTGAAAGTGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTATAAAAGAATCTAAGCTTGTGATAGCTGCAGAAAGCATTAAGTATGGGCTTGACATTCTACAGGGTATTCAAAATGAGAACAAGAGCTTAAAAAAATCACTGAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAATTGCTTGCTGATGTTATTCCACCAACCGATGTTGGGGTCACGTTTGATGATATTGGAGCTTTAGAAAACGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTTGCAAAGGACAGCTGACTAAGCCTTGTAAGGGAATATTGCTTTTTGGGCCCCCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCCATGTCCAGTATTACTTCAAAGTGGTTTGGCGAAGGAGAAAAATATGTCAAAGCAGTTTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAACGAATTTATGGTTAATTGGGATGGTTTGCGGACCAAAGATAAAGAGCGTGTACTGGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGAAGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTGAGAGTCATTTTAGGGAAAGAAGATTTGGCACCTGATGTTGATTTGGAAGCAGTAGCAAATATGACTGATGGATATTCAGGGAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAAAAGGAAAAGGAGGAGAGAAGCTTAGCATTGGCCGAGAGCAAACCTTTACCTGGATTGTGTAGCAGTGCTGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGCGTGTCATCAGAATCAACAAATATGAATGAGCTACTCCAATGGAATGACCTTTATGGAGAAGGTGGATCCAGAAAAATGAGATCTTTGAGCTATTTCATGTAA 3750 0.4288 MVETRRSSSSSKRSLSSPSSSTAKRSKVSEDATSSTQPSAGIIAPVNESGTGNESGEPEIRPSDLPETASLKAVDVCDAMLPDKEPSVPVEGEDLVSPQYIGKTAEKSTVAVAGAAQGRSKKRPTKSSPKTAWGKLLSQWSQNPHLSMYDPIYTVGQGRQCNLWLKDPTVGNILCKLSRIERGDSSVALLETTGGKGAVQVNGKTYRKNASQILSGGDEVVFGSSGKHAYIFQQLTNDNIATAGITSPVSILEAQSTPINGMQVEARSGDPSAVAGASILASLSNLHKDLSLITPAKTSKNVQQNTDVSSQPSGHGDDIPDIEVKDTINNDEPAGVFSADKAVLASSTTVNENPSLDNLDVDSNVKEDVGKMTATLQLRPLLRMLSGSRQEFDLRSTISKILEERRELKELLKDIDTPTILASTRRQAFKDSLQQRILNAENIDVSFESFPYYLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVSPRILLSGPAGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPLKEVDSAKESSRPEKSSVFAKRSTQAATLQHKKPLSSVDAEIMGGSTLSSHAMLKQEVSTASSKVTTLKTGDRVRFVGNFPYAVSSLQNYPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDHGFFCSANHLLRVDGSGGDDIDRVAINEIFEVASNQSKSGALVLFIKDIEKAMVGNSEVLKSKFESLPKNVVVIGSHTQLDNRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKIMKQLGRLFPNRVTIQLPQDEALLSDWKQQLERDVETMKAQSNVVSIRFVLNRIGLDCPDLETLCIKDQTLTTESVEKIIGWAISYHFMHSSEASIKESKLVIAAESIKYGLDILQGIQNENKSLKKSLKDVVTENEFEKKLLADVIPPTDVGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILGKEDLAPDVDLEAVANMTDGYSGSDLKNLCVTAAHCPIREILEKEKEERSLALAESKPLPGLCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4634g00005 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 944 1223 IPR027417 -
Gabi4634g00005 1249 SUPERFAMILY SMAD/FHA domain 133 227 IPR008984 GO:0005515
Gabi4634g00005 1249 MobiDBLite consensus disorder prediction 1 71 - -
Gabi4634g00005 1249 SMART AAA_5 981 1118 IPR003593 GO:0016887
Gabi4634g00005 1249 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 943 1119 - -
Gabi4634g00005 1249 Coils Coil 394 414 - -
Gabi4634g00005 1249 MobiDBLite consensus disorder prediction 1 56 - -
Gabi4634g00005 1249 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 427 1248 - -
Gabi4634g00005 1249 CDD RecA-like_ATAD1 948 1114 - -
Gabi4634g00005 1249 Gene3D - 132 242 - -
Gabi4634g00005 1249 ProSitePatterns AAA-protein family signature. 1088 1107 IPR003960 GO:0005524|GO:0016887
Gabi4634g00005 1249 Pfam ATPase family associated with various cellular activities (AAA) 985 1114 IPR003959 GO:0005524|GO:0016887
Gabi4634g00005 1249 MobiDBLite consensus disorder prediction 530 552 - -
Gabi4634g00005 1249 Coils Coil 905 925 - -
Gabi4634g00005 1249 Gene3D - 1117 1211 - -
Gabi4634g00005 1249 Gene3D - 943 1223 IPR027417 -
Gabi4634g00005 1249 Pfam AAA+ lid domain 1138 1174 IPR041569 -
Gabi4634g00005 1249 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4634g00005 Gabi-Chr4634 164022 176613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4634g00005 980 1186 Calmodulin-binding Proteins AT3G56690 36.667 2.11e-32 135