Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4634g00004 ATGGTTGAAACCAGAAGCAGCTCCTCTTCTTCCAAGCGCTCTCTCTCTTCGCCTTCTACTTCCAACGCCAAACGATCCAAGGTGTCGGAGGATGCCACATCCGCAACCCAGCCCTCGCCGGGAATTATCGCTCCGGTCAACGAATCTGGAACCGGAAATGAATCTGGGGAACCGGAGATACGACCCTCTGATCTGCCAGATACGGCGTCGTTGAAGACTGTGGATGTTTGTGATGCGATGTTACCCGATAAGTCTCCTTCTGTGCCCGTCGAAGATGAGGCTTTGGTGTCCCCTCAGTGTCTAGGTGAAACCTCGGAGAAATCAAACATGACCGCCGCAGTGGCAGCGCCGCCGCCTGGTCGGTCGAAGAAGCGCCCTACGAAATTCAGCCCCAAGGCTGCGTGGGGAAAGCTCCTCTCTCAGTGTTCTCAGAATCCTCACCTGCCCATATGTGATCCTATCTTCACTGTTGGTCAAGGTCGTCAGTGTAATTTATGGCTTAAAGATCCTACTGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGCTCGTCTGTTGCATTACTGGAAATCACAGGGGTTAAAGGTGCTGTTCAAGTTAATGGCAAAACTTACCGAAAGAAAGCCCGTCAAATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCACAAGTAGTAATATTACTACTGCTGGTATATCGTCTTCTTTGAGTATTTTAGAAGCCCAGAATTCTCGAATAAATGGAATGCAAGTTGAAGCTAGATCTGGAGACCCTTCAACTGTCACAGGAGCATCAATTTTGGCCTCTTTATCTAATCTTCATAAAGAGTTATTGCTCCTTCCACCTCCTGCTAAAACTGGCAAGAATGTGCAACAGAACACTGATGTTTCATCAGTACCTTTTGGCCATGGAGATGATATTCCAGACAATGAAATGAAAGATACCACCAATAATGATGAACTGGCTGGAGTTTTTTCTGCTGAAAAAACTGTCCTTGCATCCTCTACCAATGTTGATGAAAATCCTAGCCTTGACACCATGGAAGTTGATGCCAATGTCGATGCAGATATTGGAAAGATGACTTCTGCTACCTATGAATTGAGACCATTACTGCGCATGCTTGCTGGCTCATGTCCTGAATTCGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGAGCGAAGAGAATTAAGAGAACTCCTTAAAGATGTTGATACCTCAATAGTATTGGCATCGACCAAGCGCCAAGCATTTAAAGAAAGTCTAGAACAGAGAATTCTCCATGCTGATAGTATCGATGTCTCATTTGAAAGTTTTCCATATTATCTAAGTGATGCAACAAAGAATGTTTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAAACCTGTCATCAGTGTCCCCACGGATATTGCTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGGCTACTAATTGTGGATTCGCTTTCACTGCCCGGTGGAACACCATTAAAGGAAGTTGATTCTGCTAAAGAAAGTTTAAGGGCAGAAAAACTATCTGTGTTTGCTAAGAGAAGTAACCAGGCTACCACATTACAGCAAAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTATTGGTGGGTCCACATTAAGTTCTCAGGCTATGCTAAAGCAAGAGGTTTCTACTGCGTCATCAAATGGAACTACTCTTAAAACAGGTGATCGAGTAAAATTTATTGGCAACTTTCCTTCTGCTGTCTCCTCGCTACAAAATTATCCTTCAAGGGGACCAAGCTATGGCTCCCGGGGAAAAGTTCTTCTTGCTTTTGAAGATAATGGATCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGCGAAGATGATCACGGATTCTTTTGTTCTGCAAATCATTTACTACGGGTAGATGGTTCTGGAGGGGATGAAATTGACAAAGTTGCAATTGATGGAATCTTTGAGGTTGCCTCCAATCAGAGCAAAAGTGGAGCACTAGTGTTGTTTATTAAAGATATCGAAAAGGCGATAATTGGGAACTCAGAAGTTTTGAAAAGTAAATTTGAAAGCTTGCCACAGAATGTTGTGGTAATTGGCTCGCATACCCAGCTGGACAATCGAAAGGAAAAGACCCAATCTGGCGGCCTTCTGTTTACAAAGTTTGGGAGCCATCAGACAACACTTCTTGATCTTGCTTTTCCGGATAACTTAAGTAGACTGCATGATAGGAGCAAGGAAACCCCCAAAGTAATGAAGCAACTTAGTCGCCTTTTCCCAAACAGAGTTACAATACAGCTGCCTCAGGACGAGGCTTTACTTTCTGATTGGAAGCAGCAGTTAGAACGTGATGTTGAAACCATGAAAGCTCAGTCCAATGTTGTTAGCATTCGCTTAGTTCTCAACAGAATTGGACTGGATTGCCCTGACCTTGAGACTCTTTGCATCAAAGATCAAAACCTAACTACTGAAAGTGTGGAGAGGATCATTGGTTGGGCTATAAGTTATCATTTTATGCATTCTTCTGAAGCTTCCACCAAAGACTCTAAGCTTGTGATTTCTGCAGAAAGCATTAAGTACGGGCTTGACATTCTACAGGGCATTCAAAATGAGAACAAAAACTTAAAAAAATCACTGAAGGATGTGGTTACAGAGAATGAATTTGAGAAAAAATTGCTTGCTGATGTTATTCCACCAACTGATGTTGGGGTCACGTTTGATGATATTGGAGCTTTAGAAAACGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTTGCAAAGGACAGCTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCAGGTACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACCGAAGCTGGGGCAAATTTCATCAACATTTCAATGTCCAGTATTACTTCAAAGTGGTTTGGTGAAGGTGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCTAGCAAAATCGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTGGGGAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACAAAAGATAAGGAGCGTGTACTTGTTCTTGCTGCTACAAACCGGCCTTTTGATCTTGACGAGGCTGTTATTAGGAGGCTTCCACGAAGATTGATGGTTAATTTGCCAGATGCTACAAACAGAGAAAAAATTCTGAGAGTCATTTTAGCAAAAGAAGATTTGGCACCTGATGTTGATTTGGAAGCAGTAGCAAATATGACTGATGGATATTCCGGGAGTGACCTAAAGAATCTGTGTGTCACTGCAGCTCACTGTCCAATAAGAGAGATTTTGGAGAAGGAAAAGAGGGAGAGAAGCTTAGCATTGGCTGAAAGCAGTGCTGATATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACACGAGCAGGTATGTGCAAGCGTGTCATCGGAATCAAAAAATATGAATGAACTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCGAGAAAAAAGAGATCTTTGAGTTATTTCATGTAA 3738 0.4262 MVETRSSSSSSKRSLSSPSTSNAKRSKVSEDATSATQPSPGIIAPVNESGTGNESGEPEIRPSDLPDTASLKTVDVCDAMLPDKSPSVPVEDEALVSPQCLGETSEKSNMTAAVAAPPPGRSKKRPTKFSPKAAWGKLLSQCSQNPHLPICDPIFTVGQGRQCNLWLKDPTVGNVLCKLSHIERGGSSVALLEITGVKGAVQVNGKTYRKKARQILSGGDEVVFGSSGKHAYIFQQLTSSNITTAGISSSLSILEAQNSRINGMQVEARSGDPSTVTGASILASLSNLHKELLLLPPPAKTGKNVQQNTDVSSVPFGHGDDIPDNEMKDTTNNDELAGVFSAEKTVLASSTNVDENPSLDTMEVDANVDADIGKMTSATYELRPLLRMLAGSCPEFDLSGSISKILEERRELRELLKDVDTSIVLASTKRQAFKESLEQRILHADSIDVSFESFPYYLSDATKNVLIASTYIHLKCNGFGKYASNLSSVSPRILLSGPAGSEIYQETLSKALVKHFGARLLIVDSLSLPGGTPLKEVDSAKESLRAEKLSVFAKRSNQATTLQQKKPASSVDAEIIGGSTLSSQAMLKQEVSTASSNGTTLKTGDRVKFIGNFPSAVSSLQNYPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDHGFFCSANHLLRVDGSGGDEIDKVAIDGIFEVASNQSKSGALVLFIKDIEKAIIGNSEVLKSKFESLPQNVVVIGSHTQLDNRKEKTQSGGLLFTKFGSHQTTLLDLAFPDNLSRLHDRSKETPKVMKQLSRLFPNRVTIQLPQDEALLSDWKQQLERDVETMKAQSNVVSIRLVLNRIGLDCPDLETLCIKDQNLTTESVERIIGWAISYHFMHSSEASTKDSKLVISAESIKYGLDILQGIQNENKNLKKSLKDVVTENEFEKKLLADVIPPTDVGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNREKILRVILAKEDLAPDVDLEAVANMTDGYSGSDLKNLCVTAAHCPIREILEKEKRERSLALAESSADIRPLKMEDFRYAHEQVCASVSSESKNMNELLQWNDLYGEGGSRKKRSLSYFM 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4634g00004 1245 ProSiteProfiles S4 RNA-binding domain profile. 198 237 - -
Gabi4634g00004 1245 SMART AAA_5 985 1122 IPR003593 GO:0016887
Gabi4634g00004 1245 Pfam AAA+ lid domain 1142 1178 IPR041569 -
Gabi4634g00004 1245 MobiDBLite consensus disorder prediction 102 128 - -
Gabi4634g00004 1245 MobiDBLite consensus disorder prediction 1 71 - -
Gabi4634g00004 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 948 1218 IPR027417 -
Gabi4634g00004 1245 Gene3D - 134 244 - -
Gabi4634g00004 1245 MobiDBLite consensus disorder prediction 1 56 - -
Gabi4634g00004 1245 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 947 1123 - -
Gabi4634g00004 1245 CDD RecA-like_ATAD1 952 1118 - -
Gabi4634g00004 1245 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 431 1244 - -
Gabi4634g00004 1245 ProSitePatterns AAA-protein family signature. 1092 1111 IPR003960 GO:0005524|GO:0016887
Gabi4634g00004 1245 Gene3D - 947 1217 IPR027417 -
Gabi4634g00004 1245 Gene3D - 1121 1207 - -
Gabi4634g00004 1245 Pfam ATPase family associated with various cellular activities (AAA) 989 1118 IPR003959 GO:0005524|GO:0016887
Gabi4634g00004 1245 Coils Coil 909 929 - -
Gabi4634g00004 1245 SUPERFAMILY SMAD/FHA domain 135 228 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4634g00004 Gabi-Chr4634 85446 112848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4634g00004 948 1225 Calmodulin-binding Proteins AT3G56690 38.163 1.96e-42 167