Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4632g00002 ATGGAGAAGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCCAATGGCAGAGCTTTGGGGGGTCATATGAAGTCTCACATGATGAACCTTCCTCTTACAAAGCCAGAAGAAGAGTCAACACGAGCGATCCAACTCAGTTTTGAAGCTGAATCAGCTTCATCGTCGAGCATTCACCTTGTAAATCCTGAGTTTTCTTTCGCTGCTGCGGATACTGGGACTGTGATTCTTCAAGATAGAGAGAGTGAGACCGAGTCATCGAAGAACAACCCAACGCGTAGAAGATCCAAAAGGGCATGGAAACTCGGTATGTTCAATTATAAGTACCATCATAATAACATCAAGCAATTTCATAATCATGAAGCCACGATGAAGAAGGTAAAATTTTGCGAACCTAGTAAAACAGAATCGTGGGTCGACCATGAACCTGTGAGTTCGGTTTCTGATATAACCGCCGAGGAAGATGTTGCATTTTGTCTAATGATGCCGTCTAGGGACAAATGGAAGAGACAAAAGGATTTGAAACAATTGGCGGAAGACCAATATGAAGAAGAGGAAGATGAATCCGAGAGATCCTTGGAAGATAGTGATGAATCCGAGGAGCAGATAAAATTGTCGAAGAACCGAGTACGAGGAAGGTATAAATGTGATACCTGCAAGAAAATGTTTCGATCTTATCAAGCACTTGGTGGTCACAAAGCGAGTCACAAGAAGATCAGAGTGAACGTAATAGTGGATGAACCAGGATTTGAGCACGGGAACAATGGAACTTATGCTCCTATGGTGGTGGAAAAGAAAATCCATGAGTGCCCAGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCACTCGGTGGACACAAGAGAACCCATGTTCCTGGATCAGCAACAATCAGTGTTCCAAGTTTAACAAAGTTTAGAAACAACTTTATAGATCTTAACCTTCCTGCTCCAATTGATGATGATGATGATGATATTAGCCAAATCGAGAACTCTGCAGTTTCAGATGGAGAATTTGTCAAAACCCAATAG 1026 0.425 MEKHKCKLCFRSFSNGRALGGHMKSHMMNLPLTKPEEESTRAIQLSFEAESASSSSIHLVNPEFSFAAADTGTVILQDRESETESSKNNPTRRRSKRAWKLGMFNYKYHHNNIKQFHNHEATMKKVKFCEPSKTESWVDHEPVSSVSDITAEEDVAFCLMMPSRDKWKRQKDLKQLAEDQYEEEEDESERSLEDSDESEEQIKLSKNRVRGRYKCDTCKKMFRSYQALGGHKASHKKIRVNVIVDEPGFEHGNNGTYAPMVVEKKIHECPVCFRVFASGQALGGHKRTHVPGSATISVPSLTKFRNNFIDLNLPAPIDDDDDDISQIENSAVSDGEFVKTQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4632g00002 341 Gene3D Classic Zinc Finger 210 289 - -
Gabi4632g00002 341 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 340 IPR044303 GO:0006355
Gabi4632g00002 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Gabi4632g00002 341 SUPERFAMILY beta-beta-alpha zinc fingers 212 289 IPR036236 -
Gabi4632g00002 341 Pfam C2H2-type zinc finger 4 27 - -
Gabi4632g00002 341 Pfam C2H2-type zinc finger 267 289 - -
Gabi4632g00002 341 Pfam C2H2-type zinc finger 212 237 - -
Gabi4632g00002 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 289 IPR013087 -
Gabi4632g00002 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gabi4632g00002 341 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gabi4632g00002 341 ProSitePatterns Zinc finger C2H2 type domain signature. 269 289 IPR013087 -
Gabi4632g00002 341 SMART c2h2final6 4 26 IPR013087 -
Gabi4632g00002 341 SMART c2h2final6 267 289 IPR013087 -
Gabi4632g00002 341 SMART c2h2final6 213 235 IPR013087 -
Gabi4632g00002 341 MobiDBLite consensus disorder prediction 178 203 - -
Gabi4632g00002 341 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Gabi4632g00002 341 Coils Coil 167 201 - -
Gabi4632g00002 341 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4632g00002 Gabi-Chr4632 18600 19895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4632g00002 1 324 C2H2 Transcription Factor Family AT3G60580 46.707 7.83e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4632g00002 zf-C2H2_6 6.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4632g00002 - - vra:106780254 383.259