Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4632g00001 | ATGGAGAAGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCCAATGGCAGAGCTTTGGGGGGTCATATGAAGTCTCACATGATGAACCTTCCTCTTACAAAGCCAGAAGAAGAGTCAACACGAGCGATCCAACTCAGTTTTGAAGCTGAATCAGCTTCATCGTCGTCATCATCTTCGGAAGAAGAAGGTGATGATGATAAGGGTCTTTGTTGTGGCCTCAGAGAGAACCCAAAGAGGAGCATTCACCTTGTAAATCCTGAGTTTTCTTTCGCTGCTGCGGATACTGGGACTGTGATTCTTCAAGATAGAGAGAGTGAGACCGAGTCATCGAAGAACAACCCAACGCGTAGAAGATCCAAAAGGGCATGGAAACTCGGTATGTTCAATTATAAGTACCATCATAATAACATCAAGCAATTTCATAATCATGAAGCCACGATGAAGAAGGTAAAATTTTGCGAACCTAGTAAAACAGAATCGTGGGTCGACCATGAACCTGTGAGTTCGGTTTCTGATATAACCGCCGAGGAAGATGTTGCATTTTGTCTAATGATGCCGTCTAGGGACAAATGGAAGAGACAAAAGGATTTGAAACAATTGGCGGAAGACCAATATGAAGAAGAGGAAGATGAATCCGAGAGATCCTTGGAAGATAGTGATGAATCCGAGGAGCAGATAAAATTGTCGAAGAACCGAGTACGAGGAAGGTATAAATGTGATACCTGCAAGAAAATGTTTCGATCTTATCAAGCACTTGGTGGTCACAAAGCGAGTCACAAGAAGATCAGAGTGAACGTAATAGTGGATGAACCAGGATTTGAGCACGGGAACAATGGAACTTATGCTCCTATGGTGGTGGAAAAGAAAATCCATGAGTGCCCAGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCACTCGGTGGACACAAGAGAACCCATGTTCCTGGATCAGCAACAATCAGTGTTCCAAGTTTAACAAAGTTTAGAAACAACTTTATAGATCTTAACCTTCCTGCTCCAATTGATGATGATGATGATGATATTAGCCAAATCGAGAACTCTGCAGTTTCAGATGGAGAATTTGTCAAAACCCAATAG | 1098 | 0.4271 | MEKHKCKLCFRSFSNGRALGGHMKSHMMNLPLTKPEEESTRAIQLSFEAESASSSSSSSEEEGDDDKGLCCGLRENPKRSIHLVNPEFSFAAADTGTVILQDRESETESSKNNPTRRRSKRAWKLGMFNYKYHHNNIKQFHNHEATMKKVKFCEPSKTESWVDHEPVSSVSDITAEEDVAFCLMMPSRDKWKRQKDLKQLAEDQYEEEEDESERSLEDSDESEEQIKLSKNRVRGRYKCDTCKKMFRSYQALGGHKASHKKIRVNVIVDEPGFEHGNNGTYAPMVVEKKIHECPVCFRVFASGQALGGHKRTHVPGSATISVPSLTKFRNNFIDLNLPAPIDDDDDDISQIENSAVSDGEFVKTQ | 365 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4632g00001 | 365 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 239 | 259 | IPR013087 | - | |
| Gabi4632g00001 | 365 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Gabi4632g00001 | 365 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 364 | IPR044303 | GO:0006355 | |
| Gabi4632g00001 | 365 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Gabi4632g00001 | 365 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 291 | 313 | IPR013087 | - | |
| Gabi4632g00001 | 365 | MobiDBLite | consensus disorder prediction | 202 | 227 | - | - | |
| Gabi4632g00001 | 365 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 293 | 313 | IPR013087 | - | |
| Gabi4632g00001 | 365 | Pfam | C2H2-type zinc finger | 291 | 313 | - | - | |
| Gabi4632g00001 | 365 | Pfam | C2H2-type zinc finger | 236 | 261 | - | - | |
| Gabi4632g00001 | 365 | Pfam | C2H2-type zinc finger | 4 | 27 | - | - | |
| Gabi4632g00001 | 365 | Coils | Coil | 191 | 225 | - | - | |
| Gabi4632g00001 | 365 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Gabi4632g00001 | 365 | SMART | c2h2final6 | 291 | 313 | IPR013087 | - | |
| Gabi4632g00001 | 365 | SMART | c2h2final6 | 237 | 259 | IPR013087 | - | |
| Gabi4632g00001 | 365 | SUPERFAMILY | beta-beta-alpha zinc fingers | 236 | 313 | IPR036236 | - | |
| Gabi4632g00001 | 365 | MobiDBLite | consensus disorder prediction | 203 | 219 | - | - | |
| Gabi4632g00001 | 365 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 237 | 264 | IPR013087 | - | |
| Gabi4632g00001 | 365 | Gene3D | Classic Zinc Finger | 234 | 313 | - | - | |
| Gabi4632g00001 | 365 | MobiDBLite | consensus disorder prediction | 46 | 71 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4632g00001 | Gabi-Chr4632 | 18600 | 19895 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4632g00001 | 1 | 348 | C2H2 Transcription Factor Family | AT3G60580 | 42.416 | 9.25e-69 | 216 |
Transcription factors information