Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4624g00078 | ATGCTAAGCCAATCCGATTCACCCAACGAGTCCACTAACCCACTGAGTCAACTCGCTGAGAACATGTTCTCCGACAACGGCAACATCATGCTTGCAGCCATCGTTTCCCTGATCCTAGTCATCCTCTTCGTCCTTCTACTCCACGTGTATGCCAAGTGGTTCTTAGCTCAGGTCCAGTCACAGTCACAGGCTCGCCACCGGCGAACTCCGGTGAGCATATCAGGCTTCCTCGGGCCTTCCAACTTCCACAACATCAACATAGAAAACTCACCCATTTCGACCAAAGGACTCGACTCGGCGATAGTTTCGGCGATTCCCATGTTTGTATATGAAACAACAGAAGCAGAAGCAGAGGAATTGGAATGCGTGATTTGTTTGAGCGCTATTGAGGAGGGCGAGATTGGAAGGAGCTTACCCAAGTGTGGCCATGCTTTTCACGTGGAGTGCATTGACATGTGGTTGAGTTCGCATTGCAATTGTCCAATTTGTAGAGCTCCTATTGTGATGGGTGGTGTTGTTCACAACAATTCTCAATTGGGTTCCTTTGATGAGGATGATGGTGGTGATGATGACACTGTGCTTGAGATTGTGATTGGTACTCCAAATTATGAGATTAGCGAGAATGATCGTGGGAATGATAATTATGGAGGTGTTGGGGTGAATGGTTCTGTATCAGAAACTTCATCATCTCTGTTGGGTTACTCTTTGAAGAGAATGCTGAGTACAAAGTTTTTCTGTCTTTCAATGTAA | 750 | 0.4627 | MLSQSDSPNESTNPLSQLAENMFSDNGNIMLAAIVSLILVILFVLLLHVYAKWFLAQVQSQSQARHRRTPVSISGFLGPSNFHNINIENSPISTKGLDSAIVSAIPMFVYETTEAEAEELECVICLSAIEEGEIGRSLPKCGHAFHVECIDMWLSSHCNCPICRAPIVMGGVVHNNSQLGSFDEDDGGDDDTVLEIVIGTPNYEISENDRGNDNYGGVGVNGSVSETSSSLLGYSLKRMLSTKFFCLSM | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4624g00078 | 249 | FunFam | RING-H2 finger protein ATL1 | 84 | 169 | - | - | |
| Gabi4624g00078 | 249 | CDD | RING-H2_EL5-like | 122 | 164 | - | - | |
| Gabi4624g00078 | 249 | ProSiteProfiles | Zinc finger RING-type profile. | 122 | 164 | IPR001841 | - | |
| Gabi4624g00078 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 169 | IPR013083 | - | |
| Gabi4624g00078 | 249 | Pfam | Ring finger domain | 121 | 164 | IPR001841 | - | |
| Gabi4624g00078 | 249 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 10 | 174 | - | - | |
| Gabi4624g00078 | 249 | SMART | ring_2 | 122 | 163 | IPR001841 | - | |
| Gabi4624g00078 | 249 | SUPERFAMILY | RING/U-box | 113 | 169 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4624g00078 | Gabi-Chr4624 | 677551 | 678381 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4624g00078 | 21 | 165 | Rapid Response to Elicitors | AT3G16720 | 37.415 | 2.54e-31 | 115 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4624g00078 | - | - | gmx:100777829 | 269.24 |