Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4624g00074 ATGGCTTCGTGGGTTAGAGGCAAGTGCGTTGGAAAGGGTGCGTTCGGAATCGTAAATATAGCTGTTTCCAAACCGGACGGTCGGGTTTTTGCGGTGAAGTCCGTGGATCGCAAAACGGGTCTCCCGGGTCAGCTGGAGGCGTTGGAGAACGAGATTCGTATCCTCCGGCGTATGTCTTCGCCTCACGTGGTGTCCTTTCTCGGCGATGATGCCACGTGCGAGGAAGGCTCAACGTCGTCGTTCCGGAACCTGCACTTGGAGTACATGCCAGGTGGAACCGTCGCTGACATGGACGCTGATGCTGACGTGGACGAACGGTTGGTGAGGCGCTACGCTTGGTGCTTGGTGAGCGCGCTGCGTCACGTTCACGAGCGTGGCGTCGTGCACTGCGACGTGAAAGGGAGGAACGTGCTCGTCTCCGGCGACGGCGAAGTCGCCAAGCTCGCCGACTTCGGATCGGCGGTGGAATTCTCCGGCAGGGATTGTCCTGCGGGGATCTTACCGCGTGGAAGCCCGATGTGGATGGCGCCGGAGGTGATTCGCCGGGAGTATCAGGGGCCGGAGTCCGACGTGTGGTCACTTGGATGCACGGTGATCGAGATGATCACCGGAAAACCGGGGTGGGAGGATCGCGGCGTTGACACGCTGAGTCGAATCGGGTATTCCGGTGAGTTGCCGGAGATTCCGAGCAAGTTGTCGGAGCTAGGCCGCGATTTCGTCGAGAAGTGTCTGAGGAGGGAACCGAGCCGGCGGTGGAGCTGTGATCAGCTGCTACAGCATCCATTTTTGCTTCACAATAAGGTTGTTGAATCGTCCCCTCGGTGCGTTCTGGACTGGGTTGACTCACAATTCGCCGAGTCAGTTAACGACGGTGAAGAAGAAGAAGAAGAAGAGATGATGTTGGACGATAGTGAAAAAATTTCAGTGAGAAATAGGATTGGTAAATTAGCAACAGAATCGAGGGCAAATTGGGAAACGGAGGGTTGGGTAGAGGTGAGGGCAATTGCGTCCGACGCAGAAGCAACGACAACAACAGAAACAAAAGCGTGTGATGGTGGGTGTGGAGACGAAGAAGGAGGGGCAGGTTGGGAATTTGAGAATGTATTGAGGGTAGAAGAGGGAATAGAGTTAGGGACTCGTTTGGAATATTCTGGTTCAGAAACAGCAAGAAATGAAGGGTTAAATCGGGAAATGTGGAAGTTGGGAGAGAGGAACAGGTTGGTGTGGCGGCGTGAGTGTGATAAGTTTAACCACAACCGCAACCGTGGTGGTTGGAGTTGTCGGTATGGGTATGGGTTGAAAAAGTTGGATAGGATAAGAGGAATATTCTGCATTTACAGCCTATGTTGTAAAATTTTCAAATCATATTGTTTATTATCAATAATATATTTCAATATATACTATGCTTTTCGATTGCATGATATAAAATTCACCGTAAAAGACGCAGCAATTAAGAAACAGTCACCCCGTTAA 1473 0.5187 MASWVRGKCVGKGAFGIVNIAVSKPDGRVFAVKSVDRKTGLPGQLEALENEIRILRRMSSPHVVSFLGDDATCEEGSTSSFRNLHLEYMPGGTVADMDADADVDERLVRRYAWCLVSALRHVHERGVVHCDVKGRNVLVSGDGEVAKLADFGSAVEFSGRDCPAGILPRGSPMWMAPEVIRREYQGPESDVWSLGCTVIEMITGKPGWEDRGVDTLSRIGYSGELPEIPSKLSELGRDFVEKCLRREPSRRWSCDQLLQHPFLLHNKVVESSPRCVLDWVDSQFAESVNDGEEEEEEEMMLDDSEKISVRNRIGKLATESRANWETEGWVEVRAIASDAEATTTTETKACDGGCGDEEGGAGWEFENVLRVEEGIELGTRLEYSGSETARNEGLNREMWKLGERNRLVWRRECDKFNHNRNRGGWSCRYGYGLKKLDRIRGIFCIYSLCCKIFKSYCLLSIIYFNIYYAFRLHDIKFTVKDAAIKKQSPR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4624g00074 490 Pfam Protein kinase domain 6 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4624g00074 490 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 335 - -
Gabi4624g00074 490 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Gabi4624g00074 490 FunFam Serine threonine protein kinase putative 2 317 - -
Gabi4624g00074 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Gabi4624g00074 490 Gene3D Transferase(Phosphotransferase) domain 1 2 330 - -
Gabi4624g00074 490 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi4624g00074 490 ProSiteProfiles Protein kinase domain profile. 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4624g00074 490 CDD STKc_MAPKKK 3 263 - -
Gabi4624g00074 490 SMART serkin_6 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4624g00074 Gabi-Chr4624 601307 603946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4624g00074 4 341 MAP Kinase Kinase Kinase AT2G30040 60.641 3.58e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi4624g00074 Pkinase 2.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4624g00074 - - gmx:100807131 545.043