Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4624g00059 ATGTGCAGTGGTTCCAAGAGGAAACCTTCTCAAACTGGTGTTGTCATGGAGGATGAGTATGGAAAAGGAGAAGGACTGCATCATAAAATTTCTGCCTTGCTTGAATTTTCGGCTGCAGATGATCTGATTGGTTTCAAAAATACGGTTGAAAAGGAGGGTCATGATGTTGATGAGGTTGGCTTGTGGTATGGAAGGAGGGTTGGCTCCAAGAAAGTGGGTTATGAAGAGAGGACGCCTCTCATGGTAGCTGCTATGTTTGGAAGCCTAGGTGTAACAACTTATATTCTTGGAACAGGTCGTGTTGATGTTAACCGGGCTAGTGGATCAGATGGGGCTACTGCTCTGCATTGTGCTGTTGCTGGGGTTTCTGCTGCTTCCTTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCCAATGGTAACCAACCCCTTGAATTGATTGTCTCTGTTCCTAATGCTATCTTCAATCCAAGGAAGAGGATGCTACAAGCCCTACTGGAGGGTAAAGATGGTGCTGATCAGGCATGTCTTACATTTCTTGGAGTGGTTGACCAAATTGAGGAACAACAAAGACAAGATATGAACACACCTCGTGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATAGTACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCATGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAACGCAAGGCGGCGTGATCCAAGGAAATATCATTATAGCTGTGTTCCTTGTCCTGAGTTTCGGAAGGGATCCTGCAGCAAGGGGGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTGCACCCTGCCCAGTATCGGACACGACTTTGCAAGGATGAGATTGGATGCACAAGAAGAGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTTCGTCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCCAGGTCATATTCTGCTAGCCCGTCTGCATTGGAGATGGGTTCAGTGAGCCCAATCTCACTTGGTTCTCCATCTGTCTTGATACCACCTGCATCAACACAACCTTTAACCTCATCTGGAGGATCTTCTCCTTTGGCTGGATCCATGTGGCAGACTCAATCAAATGTTACTGTCCCTACCCTGCAGCTGCCCAAGAGCAGATTGAAGACTGCATTAGCTGCTAGAGATATTGATTTAGATATTGAATATCTTGGAGGACTTGAAACTCATCTACGTAGGCAGCAACTGTTGATGGATGAGATATCTGGTCTTTCCTCCCCTTCCAACTGGAAAAATTCGATGCCTAATAGTCCATCTTTTCCTGTTTCTTTGGGTGATCATACCGGGGAGTTAAATAGGCTTTCAGGGGTGAAGCCTGCTAAACTTGAAGACATTTTTGGGTCTCTTGATCCATCAATTTTGCCTAAATTCCATGGAATTTCACTTGATGCTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAGATGTGTCAAAATGTGAACCAGCAGCTGCGAAGTTATCCTTCCAGCCTTTCCACTTCAAATGTGATTGGATCGCCGTCTTTTAGGGTTGATCCATCTGGGGAAGCAGCCACAGTAGCTTTGAATCCAAGAATTGCTGCTTTTTCAAAGCGGAGCCAGAGCTTCATTGAACGTAGTGTGGTGAATCATCATTATGAGCTTCCTTCTCCTGCTACCTCTGTAGCAGCAAAGCCTTCTACCTTTTCTGACTGGGGTTCCCCTGATGGAAAATTAGATTGGGCTATACATGGAGAAGAGCTGAATAAGCTGAGGAAATCTGCTTCTTTTGGATTTCGGAGCAGCAGTAGTCCTTTAAGGATGGGTACAACCAAAGTAGCCGCAGATGTTGATGAACCAGATGTGTCTTGGGTTCACTCACTTGTGAAGGATGCTCCACACCTGGAATCTGGACAGTTCAGTGTTGAAGATCAGCAAAAACAACTGCAATGCCACCTTAACAATGGAACAGATGTGATTCCAGCTTGGTTGGAGCAACTGTACATGGAGCAAGAGCAAATGGTGGCGTGA 2136 0.4532 MCSGSKRKPSQTGVVMEDEYGKGEGLHHKISALLEFSAADDLIGFKNTVEKEGHDVDEVGLWYGRRVGSKKVGYEERTPLMVAAMFGSLGVTTYILGTGRVDVNRASGSDGATALHCAVAGVSAASFEVVKLLLDASADVSAVDANGNQPLELIVSVPNAIFNPRKRMLQALLEGKDGADQACLTFLGVVDQIEEQQRQDMNTPRVSKDGTEKKDYPVDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEIGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSASPSALEMGSVSPISLGSPSVLIPPASTQPLTSSGGSSPLAGSMWQTQSNVTVPTLQLPKSRLKTALAARDIDLDIEYLGGLETHLRRQQLLMDEISGLSSPSNWKNSMPNSPSFPVSLGDHTGELNRLSGVKPAKLEDIFGSLDPSILPKFHGISLDAAGPQLQSPTGIQMCQNVNQQLRSYPSSLSTSNVIGSPSFRVDPSGEAATVALNPRIAAFSKRSQSFIERSVVNHHYELPSPATSVAAKPSTFSDWGSPDGKLDWAIHGEELNKLRKSASFGFRSSSSPLRMGTTKVAADVDEPDVSWVHSLVKDAPHLESGQFSVEDQQKQLQCHLNNGTDVIPAWLEQLYMEQEQMVA 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4624g00059 711 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Gabi4624g00059 711 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Gabi4624g00059 711 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Gabi4624g00059 711 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Gabi4624g00059 711 Gene3D - 275 337 - -
Gabi4624g00059 711 SUPERFAMILY Ankyrin repeat 72 182 IPR036770 -
Gabi4624g00059 711 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Gabi4624g00059 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Gabi4624g00059 711 SMART ANK_2a 110 142 IPR002110 GO:0005515
Gabi4624g00059 711 SMART ANK_2a 75 105 IPR002110 GO:0005515
Gabi4624g00059 711 Gene3D - 25 180 IPR036770 -
Gabi4624g00059 711 MobiDBLite consensus disorder prediction 378 397 - -
Gabi4624g00059 711 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Gabi4624g00059 711 Pfam Ankyrin repeats (3 copies) 70 143 IPR002110 GO:0005515
Gabi4624g00059 711 PANTHER UNKEMPT FAMILY MEMBER 35 667 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4624g00059 Gabi-Chr4624 473075 476334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4624g00059 28 706 C2H2 Transcription Factor Family AT5G12850 38.652 1.04e-140 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4624g00059 Ank_2 4.8e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4624g00059 - - aprc:113846970 1178.7