Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4624g00049 ATGCCAATAAGCAGCACCGACTCAGAGGCCACCACATCGCAAACGGTGCCAATGCCATCCACCATGGATGAGGACTTGGAGAACAACATGGAGCTTTGCAATCCAAAGACACCACAAAACATGTCACGTTCGTTGGTGAGAAAGCAGTCAGAGCTTGTTCTGATCACAAATAAAATTCGGTTCCAAATGCTGCTTAGAAATTTCATGACCAACTTGCAAAAGGTCCTCTTTGGCACTAAGCTTGTTGTGCTTTTTCCGGCAGTCCCTTTAGCTGTTGCGGCAAATTTTTATAGCTTTGGAAGGCCTTGGATTTTTGCTTTCAGCTTGATTGGACTTGCTCCGCTAGCTGAACGTGTCAGCTTCCTCACTGAGCAAATTGCATATTACACTGGCCCAACAGTTGGAGGACTTCTGAATGCAACTTGTGGTAATGCAACCGAGATGATCATAGCAATATTAGCACTTCACAAAAACAAAGTTCATGTTGTGAAGTTCTCACTGCTGGGTTCCATACTCTCAAACCTTCTCTTAGTTCTTGGCAGTTCACTCCTCTGTGGTGGCTTGGCCAACCTTAAGAAGGAGCAAAGATATGACAGAAAACAGGCTGATGTAAACTCACTGCTTTTATTGCTGGGGTTGCTATGCCATTTGTTGCCATTACTGTTCAAATATGCCTTAGCAGGGGGCAATTATTCTATAGCAACCTCTACTCTTCAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGTTGCATATATCTTCTTCCAATTAAAAACTCATCGAAAAATATTTGATGCACAAGAGGAAGATGAAGATGAAGAGAAGGCCGTGATAGGGTTTGGGAGTGCATTTAGCTGGTTGGTGGGTATGACATTGCTCATATCTGTGCTTTCTGAATATGTTGTGGGAACAATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGGAACGCCGCAGAACATGCCGGTTCGATCATATTTGCTTTTAAGAACAAGTTGGACATATCTTTGGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGTTGCATGGGTAATGGGTATACGAATGGATCTGGATTTCAATCTTCTTGAAACTGGGTGTCTCGCTTTTACAATTATCGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTTTTCTCTGTTACCTTGTCATTGCTGCATGTTTTTTTGTTCTCAAAACTCCACTGATGATCAACGAATATCCTATGGTCAATTTCGGAGCTAAACCATCCTTTGATGCCATTACCACTTGA 1371 0.4209 MPISSTDSEATTSQTVPMPSTMDEDLENNMELCNPKTPQNMSRSLVRKQSELVLITNKIRFQMLLRNFMTNLQKVLFGTKLVVLFPAVPLAVAANFYSFGRPWIFAFSLIGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIAILALHKNKVHVVKFSLLGSILSNLLLVLGSSLLCGGLANLKKEQRYDRKQADVNSLLLLLGLLCHLLPLLFKYALAGGNYSIATSTLQLSRASSIVMLLAYVAYIFFQLKTHRKIFDAQEEDEDEEKAVIGFGSAFSWLVGMTLLISVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVVVAWVMGIRMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLFLCYLVIAACFFVLKTPLMINEYPMVNFGAKPSFDAITT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4624g00049 456 FunFam Vacuolar cation/proton exchanger 276 430 - -
Gabi4624g00049 456 NCBIfam calcium/proton exchanger 67 429 - -
Gabi4624g00049 456 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 47 432 IPR004713 GO:0006812|GO:0008324|GO:0016020
Gabi4624g00049 456 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4624g00049 456 FunFam Vacuolar cation/proton exchanger 132 275 - -
Gabi4624g00049 456 Pfam Sodium/calcium exchanger protein 286 427 IPR004837 GO:0016020|GO:0055085
Gabi4624g00049 456 Pfam Sodium/calcium exchanger protein 103 260 IPR004837 GO:0016020|GO:0055085
Gabi4624g00049 456 NCBIfam calcium/proton exchanger 86 429 IPR004798 GO:0006816|GO:0015369
Gabi4624g00049 456 Gene3D - 278 430 IPR044880 -
Gabi4624g00049 456 Gene3D - 132 273 IPR044880 -
Gabi4624g00049 456 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4624g00049 Gabi-Chr4624 373288 377867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4624g00049 28 434 Antiporters AT2G38170 66.506 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4624g00049 K07300 - gmx:100802344 682.559