Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4624g00027 ATGAAGTGGGAAATGGAAATCCTCTCTTCTGCACCTTGTACTCCAAACTCCAACTCAGACTCCGATTGGTTTGTGGAAGACAACAGGAGCAGTAAATGGACTCGTACAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGCATGATAAGGATACCCCAGATCGGTGGCACAAAGTGGCTGAAATGATACCGGGAAAAACAGTTAGGGATGTGATGAGGCAGTACAAGGATTTAGAAGTTGATGTTAGCAATATAGAAGCTGGTTTGATCCCAGTTCCTGGCTATAGTACTACTACCTCACCCTTCACCTTAGACTGGGTCAACACTCCTGGGTATGATGGCTTTAAAGGAAGTGGAAAGAGATCTTCCTCAGTGAGACCTCCTGAGCAAGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAACATAAATTGTTTCTATTGGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGAAATATTTCCCGCAACTTTGTTATTACTCGAACCCCAACTCAGGTAGCTAGTCATGCTCAGAAATACTTCATCAGACAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATCCATGACATAACAACGGTTAATCTCACAGAAACCATCACAACTTCTTCAGAAGACACCAATAGATCCACTTCACCACAGCATTCCATGATGCAGCAAAATTCTACTGCCACTACACCTAGAACTCATTTTCAGTGGAATAATCAGCCAAATGCAGAAGGAGCTATGCCTCTCAACCCTGCATATGAAAAAGTCTTCATGTCTCCTTATGGTGTTAACTCCTTTGGGCTTAAAATGCAGGGTCAAAATCTGCACAAGGGTGTTCATGAGTCTTCTTACTTAGGACCTCAGACACATAACATGGTTTTCCAAATGCAACAGTCCTCACAACACTATTCCCATGCATAA 936 0.4306 MKWEMEILSSAPCTPNSNSDSDWFVEDNRSSKWTRTENKLFENALAVHDKDTPDRWHKVAEMIPGKTVRDVMRQYKDLEVDVSNIEAGLIPVPGYSTTTSPFTLDWVNTPGYDGFKGSGKRSSSVRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETITTSSEDTNRSTSPQHSMMQQNSTATTPRTHFQWNNQPNAEGAMPLNPAYEKVFMSPYGVNSFGLKMQGQNLHKGVHESSYLGPQTHNMVFQMQQSSQHYSHA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4624g00027 311 FunFam transcription factor MYB1R1 136 187 - -
Gabi4624g00027 311 CDD SANT 137 182 IPR001005 -
Gabi4624g00027 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Gabi4624g00027 311 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Gabi4624g00027 311 FunFam Transcription factor SRM1 25 92 - -
Gabi4624g00027 311 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 27 249 IPR043363 -
Gabi4624g00027 311 SMART sant 29 81 IPR001005 -
Gabi4624g00027 311 SMART sant 134 184 IPR001005 -
Gabi4624g00027 311 MobiDBLite consensus disorder prediction 209 237 - -
Gabi4624g00027 311 SUPERFAMILY Homeodomain-like 131 185 IPR009057 -
Gabi4624g00027 311 Gene3D - 25 92 - -
Gabi4624g00027 311 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Gabi4624g00027 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Gabi4624g00027 311 CDD SANT 32 78 IPR001005 -
Gabi4624g00027 311 SUPERFAMILY Homeodomain-like 31 82 IPR009057 -
Gabi4624g00027 311 MobiDBLite consensus disorder prediction 116 137 - -
Gabi4624g00027 311 ProSiteProfiles SANT domain profile. 28 83 IPR017884 -
Gabi4624g00027 311 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Gabi4624g00027 311 Pfam Myb-like DNA-binding domain 31 77 IPR001005 -
Gabi4624g00027 311 ProSiteProfiles Myb-like domain profile. 25 79 IPR001005 -
Gabi4624g00027 311 Gene3D - 136 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4624g00027 Gabi-Chr4624 200111 203052 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4624g00027 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4624g00027 - - gmx:778034 497.664