Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4624g00011 ATGAAGAAAACACCAAGCCCCAGTTTGCATCAATCTAGCCAAAGATCACACATTGGTTTTCTCCAAGATAGTAATGACACAAAGAGGCACACTCCCAAGACTAATCCTGCACTGAAGTTTTTCAAGAAATGTGCTGCTGTTTTTACATTGATTCTCTCTGGTAAAAGCAAAACAGCCTCAAAAGTTGTAGGAAGTGATGGCAGAAAGAATATATCAAAAGTCAGAGGGGTGGTATCATCTTCAACTGATTTGTCATCTGAAAGTAAAAAGAATTCATCAAAATGGAAGTTTTCTTATTCTTATGCATCATCTAGCACTGCAAGTGGACAGCTTGGACTTGGCAACTTCTCCTTTGAAGAGATTTACAGGTCAACTGCAAAATTCTCCCCAGATAATCAGATTGGGGAAGGTGGGTTTGGAACAGTTTATAAGGGAAAGCTTAATGATGGATCTATTGTAGCAGTGAAGCGTGCCAAGAAGGATGTACTACACAAACACTTGCACGAGTTCAAGAACGAAATATACACCTTGTCAAAAATAGACCATCTGAATCTTGTCAGGTTATATGGATATTTGGAGCATGGAGATGAGAAGATCATTGTTGTTGAATACGTTGGTAATGGAACACTTCGGGAGCATCTAGATGGTACTCGAGGAGATGGACTAGAAATTGGTGAACGTCTAGACATAGCAATTGACGTAGCTCATGCAATCACATACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCCTAATCACTGAGAACCTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCACGGTTGTCTGATGACCCTAATGCAACCCATATTTCAACTCAAGTTAAAGGAACAGCTGGATATATGGATCCTGAGTACCTGAGAACATATCAACTCACTGAAAAGAGTGATGTTTATTCCTTTGGCGTATTGCTTGTTGAAATGATGACAGGAAGACATCCCATAGAATCACAGAGACCCCTCAATGAGAGAGTGACAATCAGATGGGCAATGCAGATGATGAAAGAAGGGGGTGCTTTATTTGCCATGGACCCAAGACTGAGAAGAAGTTCAGCCTCCAACAAGGCAGTGAAGAAGGTTCTCAAGCTAGCTTTCCAATGCATTGCATCTTCCAGACAATCACGGCCAGCTATGAAGAGTTGTGCAGAGGTTCTGTGGGGCATTCGTAAAAATTTTAAAGATGATTCCATTTCTCATCTTCCCCTACCTTCTCACCATTCTGCAATTATTCCTCAAAGAGAAAAGAATAAGCATATGTTATTTGGTATTGAAGATGATGAAAGCTATAAATTTGTCTCTGCACCTAATAAAATTCATTCATAG 1368 0.3991 MKKTPSPSLHQSSQRSHIGFLQDSNDTKRHTPKTNPALKFFKKCAAVFTLILSGKSKTASKVVGSDGRKNISKVRGVVSSSTDLSSESKKNSSKWKFSYSYASSSTASGQLGLGNFSFEEIYRSTAKFSPDNQIGEGGFGTVYKGKLNDGSIVAVKRAKKDVLHKHLHEFKNEIYTLSKIDHLNLVRLYGYLEHGDEKIIVVEYVGNGTLREHLDGTRGDGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILITENLRAKVADFGFARLSDDPNATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIESQRPLNERVTIRWAMQMMKEGGALFAMDPRLRRSSASNKAVKKVLKLAFQCIASSRQSRPAMKSCAEVLWGIRKNFKDDSISHLPLPSHHSAIIPQREKNKHMLFGIEDDESYKFVSAPNKIHS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4624g00011 455 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 98 411 - -
Gabi4624g00011 455 Gene3D Phosphorylase Kinase; domain 1 86 204 - -
Gabi4624g00011 455 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4624g00011 455 ProSiteProfiles Protein kinase domain profile. 128 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4624g00011 455 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 205 414 - -
Gabi4624g00011 455 SMART serkin_6 128 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4624g00011 455 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 92 204 - -
Gabi4624g00011 455 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4624g00011 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Gabi4624g00011 455 ProSitePatterns Protein kinases ATP-binding region signature. 134 160 IPR017441 GO:0005524
Gabi4624g00011 455 Pfam Protein tyrosine and serine/threonine kinase 131 399 IPR001245 GO:0004672|GO:0006468
Gabi4624g00011 455 Gene3D Transferase(Phosphotransferase) domain 1 205 415 - -
Gabi4624g00011 455 CDD STKc_IRAK 134 400 - -
Gabi4624g00011 455 SUPERFAMILY Protein kinase-like (PK-like) 109 404 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4624g00011 Gabi-Chr4624 84816 88193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4624g00011 100 393 Receptor kinase-like Gene Family AT1G79620 43.189 1.75e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gabi4624g00011 PK_Tyr_Ser-Thr 2.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4624g00011 - - gmx:100811511 694.886