Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4623g00001 ATGTGTCCTTCAGGACCTCCTTTGACAACCATAGACATGTCCTTATCGGGCCAACACAGCAACTTCCCTCAAAAGCAACAGCCACAGCACGTTGCAAAGAACAGCTCTGCAAGTGTATTTGATGAAGAGTTCTGCAGTTTTGCTTTTCCTGGTGGTTCAACCTACAAGTATCTGTTGCCTAGCACTCAAGAAGCAATTTTTAATGCAGAATTGGTTAATATCTATGCGCCTGAGAAAGAATCTTGTGTGTCTTTGATCAAAGGACAGTGGACTCCCGAAGAAGACAGAGAACTGAAAAAGTTGGTGAATGATTATGGTACACAAAATTGGTCTAGACTTGCTGAGAAATTGGACGGAAGGGATGCAAGGCAGTGTCGGGAGAGATGGTTTTATCATCTACAGCCTGGTATCAAGGAAGGTAGTTGGAGTGAAGAAGAAGAGAGAATATTAGTTAAAATGCATGCCAAGATTGGAAATCGCTGGTCAGAGATTGCAAAGAGCATTCAAGGAAGAACAGATAGTGCCATAAAGAACCATTGGAATGGCACTATAAGCAGACAAAACTCAAGGAAAAATTACAAAAGGAAAATATGCTCGAATGGAAAGCCACAATCCTGTATTCTTGAAAACTATATTAAAAGGATAACACCTAAAAGCACCACCCACAACATCAACACATCCACAGCTTCGTTAACTACCACCCCCTCTAGCTCTGCTTCCGCAACTCATTCACATTTCAGTTTAGCTCAATCAGTCCCGGTTACCAATGAGAAATCGTCCTCACCACTCTTAGCTAGACTTGATGATGAAATGCTCTTGGTTCAAAATATTTTGAAGGAACCACTTGTGAATGTCGAATCATATTCCTTGGGTTATTACCAAACTAATGGTGATTCCAACCCAAACCCAAACTCACAAAAGATGTACTTTGGTGAGAGTCTCATCCCTACAAAGACTCTCATTCCTTCTAATAATCTTGATTCTGATATCCATCTCTCTGACTTTGAGAATGGAAATAATAGTAGTTACGTGATTCAAAACCAGAGCATGGATCTGCAGATGGAGAATCAAAATAGTTCAGAAGGAAACGAGGACATGGATTTAACGCAGTTGGTTTGTTCTGCTTTGTTTTTCCAGTAG 1140 0.4061 MCPSGPPLTTIDMSLSGQHSNFPQKQQPQHVAKNSSASVFDEEFCSFAFPGGSTYKYLLPSTQEAIFNAELVNIYAPEKESCVSLIKGQWTPEEDRELKKLVNDYGTQNWSRLAEKLDGRDARQCRERWFYHLQPGIKEGSWSEEEERILVKMHAKIGNRWSEIAKSIQGRTDSAIKNHWNGTISRQNSRKNYKRKICSNGKPQSCILENYIKRITPKSTTHNINTSTASLTTTPSSSASATHSHFSLAQSVPVTNEKSSSPLLARLDDEMLLVQNILKEPLVNVESYSLGYYQTNGDSNPNPNSQKMYFGESLIPTKTLIPSNNLDSDIHLSDFENGNNSSYVIQNQSMDLQMENQNSSEGNEDMDLTQLVCSALFFQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4623g00001 379 SUPERFAMILY Homeodomain-like 84 180 IPR009057 -
Gabi4623g00001 379 ProSiteProfiles Myb-like domain profile. 134 184 IPR001005 -
Gabi4623g00001 379 PANTHER MYB PROTEIN-RELATED 80 238 - -
Gabi4623g00001 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 129 IPR017930 -
Gabi4623g00001 379 ProSiteProfiles Myb-like domain profile. 87 133 IPR001005 -
Gabi4623g00001 379 CDD SANT 90 133 IPR001005 -
Gabi4623g00001 379 CDD SANT 141 181 IPR001005 -
Gabi4623g00001 379 Pfam Myb-like DNA-binding domain 90 147 - -
Gabi4623g00001 379 SMART sant 86 135 IPR001005 -
Gabi4623g00001 379 SMART sant 138 186 IPR001005 -
Gabi4623g00001 379 MobiDBLite consensus disorder prediction 222 244 - -
Gabi4623g00001 379 MobiDBLite consensus disorder prediction 13 33 - -
Gabi4623g00001 379 FunFam Transcriptional activator Myb isoform A 86 139 - -
Gabi4623g00001 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 188 IPR017930 -
Gabi4623g00001 379 Gene3D - 141 206 - -
Gabi4623g00001 379 Gene3D - 86 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4623g00001 Gabi-Chr4623 75258 77123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4623g00001 4 343 MYB Transcription Factor Family AT5G58850 35.433 2.20e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4623g00001 Myb_DNA-bind_6 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4623g00001 K09422 - gmx:100786295 246.128