Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4619g00001 ATGGACGACAGGAGAGTGAATATAGTCGCTGTTATATCAGTGGTTGCACTGATCATTATCATAATTGTTGCTCGTGTTTCATTGAAGCTTTCAAGGGCTTTCTTCCTCATCTGTGGAGCTGGTGTTATTGTGATTCTTTCAGTCTTTGTTTGTGTTCTTGTCATCTTAAGTTACAATCGAAGAAGGAGGCTGTTGGAGTCACAGTTGAAATCTGAAGGCCGAGAGCTACGAATAGAGTACAGTTTCTTAAGGAAAGTTGCTGGGGTCCCCACCAAGTTCAGATACAAGGAGCTTGAGGAAGCAACAGATGGGTTTCAATCGCTGCTCGGAAAAGGTGGCTCTGCTTCAGTTTTCAAAGGCATTCTTAATGATGGCACTTCAGTTGCTGTGAAACGAATTGATGCAGAAGAAAGAGGTGAGAAGGAGTTCAGATCAGAAGTTGCAGCAATTGCTAGTGTGCATCATGTGAATCTTGTGAGGCTATTGGGCTATTGTAATGCTACTTCAGCACCTAGGTACCTTGTTTATGAGTATATCTCAAATGGGTCTTTGGATTTATGGATCTTTCTCAAAAAGGAAAGTCAAAGGCGTGGTCTTGGTGGGTGCTTGTCATGGATTATGAGATATAGAGTGGCCATTGATGTTGCTAAGGGACTTGCTTACCTTCACCATGATTGCAGATCAAGGATCCTACACCTTGATATAAAGCCAGAAAATATACTTCTTGATGAAAATTATAGAGCGCTTGTTTCAGATTTTGGTCTTGCAAAGCTTATTGGTAAAGATGAAAGCCAAGTTATGTCTACAATCAGGGGAACAAAAGGCTACTTGGCTCCTGAATGGCTCTTAGAGCAGGGTGTTTCTGATAAGACTGATATCTATAGTTATGGGATGGTTCTCTTGGAGATTGTTGGAGGCAAAAAAAATGTGTCCTTCGTAGAAGATGAAAAGGACAAGTCCAAAAGAAAATGTCATTACTTTCCAAAGATTGTAAATGAGAAAGTGAGAGAGGGAAAATTCATGGAAATTGTTGATCATAGGTTACTGGAAAGTGGGGGTGTTGATGAGAGGGAGGTAAGAACATTGGTGTATGTTGCTTTGTGGTGCGTGCAAGAGAGGCCAAGATTGAGGCCTAGCATGGCCCAAGTGGTTGATATGCTTGAAGGGCGTTTGAGGGTGGAGGTGCCACCTGATACGAGAATGGTCCTTGTTGATTTGCTATCTGTGGATGAAGAAGCAACAGACAGTAATAACATGCCAAGGTTGGATTCTATGTCGAGTCAAAGAACACAAAGCAATGTGGACTGTGCATCTACCTACTCGCTTGCTACTACTGTTTTGTCAGGAAGATAG 1353 0.4205 MDDRRVNIVAVISVVALIIIIIVARVSLKLSRAFFLICGAGVIVILSVFVCVLVILSYNRRRRLLESQLKSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDGFQSLLGKGGSASVFKGILNDGTSVAVKRIDAEERGEKEFRSEVAAIASVHHVNLVRLLGYCNATSAPRYLVYEYISNGSLDLWIFLKKESQRRGLGGCLSWIMRYRVAIDVAKGLAYLHHDCRSRILHLDIKPENILLDENYRALVSDFGLAKLIGKDESQVMSTIRGTKGYLAPEWLLEQGVSDKTDIYSYGMVLLEIVGGKKNVSFVEDEKDKSKRKCHYFPKIVNEKVREGKFMEIVDHRLLESGGVDEREVRTLVYVALWCVQERPRLRPSMAQVVDMLEGRLRVEVPPDTRMVLVDLLSVDEEATDSNNMPRLDSMSSQRTQSNVDCASTYSLATTVLSGR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4619g00001 450 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4619g00001 450 Pfam Protein kinase domain 107 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4619g00001 450 FunFam Putative receptor-like protein kinase 179 395 - -
Gabi4619g00001 450 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Gabi4619g00001 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Gabi4619g00001 450 ProSiteProfiles Protein kinase domain profile. 103 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4619g00001 450 Gene3D Transferase(Phosphotransferase) domain 1 179 396 - -
Gabi4619g00001 450 PANTHER OS07G0415500 PROTEIN 30 399 - -
Gabi4619g00001 450 SUPERFAMILY Protein kinase-like (PK-like) 85 388 IPR011009 -
Gabi4619g00001 450 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Gabi4619g00001 450 FunFam Putative receptor-like protein kinase 70 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4619g00001 Gabi-Chr4619 23169 24521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4619g00001 1 399 Receptor kinase-like Gene Family AT5G20050 65.174 2.64e-180 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4619g00001 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4619g00001 - - vra:106757544 713.761