Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4615g00054 ATGGGGAATGTTGAAATCCCCAATTGGCTCAAAGGGTTGCCACTTGCACCGGAATTTCGCCCTACTGATACTGAATTCGCCGACCCAATTGCTTATATTTCGAAGATTGAGAAGGAAGCTGGCAACTTTGGGATATGTAAGATTATCCCACCGTTGCCTAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAGTTCCCTCTTGAAGTACCCGGATTTGGGTACAGATAACAGTTCCTTAGGTGTTTGTGATTCTTCGAAAATGGGTTCTAGGGATAGTGGTAGTGATGGGGTGTTGCGAGCTGTGTTTACTACAAGGCATCAAGAACTGGGGCAGAGTGTGAAAAAAGCCAAAGGGACAGTTCAGAATCCAATGTCATGTGTTCAAAAGCAAGTATGGCAAAGTGGGGAGCTCTATACATTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCTAAAAGTGTGCTGGGTATGGTGAAGGATGTTTCTCCACTAGTTATAGAGGCTATGTTTTGGAAGGCAGCTTTAGAAAAGCCTATATATCTGGAGTATGCCAATGATGTGCCTGGTTCTGCTTTTGGAGAATCCAAGGGTCATTTTCGTTATAGTCATAGAAGGCAAAGAAAACGGAATTCTTATAAGAGAAGATTGGAAAACTCTGATTGTAAACAAACTGAAACAGGTAGCTCAAGAGATGCCCAAAGTGATGAGACTAAGGGTGCTTTTGCCCAAAGTCTTGTAGAGACATGTTTACAGATGTCCAAATCAGCTACGAATGTGTCAACTTTCTCACCAAATGAACCTTCACAGTCTTCTAAGGAAAAGAGCTCAGATGCCAGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCCGGCTCGCTAACACGTTTCATGCCGGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCATGAACTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTATTGAGGAAGTCATCCGCTCTGAGGGTTATGGTGGTAATATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACAACTCTTTTGTCACCTGAGGTGGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTCGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCGGTTCGTAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTTCTTTACTTGCTTACCATGTCTTTTATTTCAAGAGTGCCAAGAACATTATTACCTGGTGTGCGTAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGTTTTTAGTAAAACAGGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGCTATCAATTCTTCTTGGAAAGAAAGAGACTAAACAAGCGGTTTTATGGAATGCTGATTTACTACCAGATTCCAGCAAATATTGTCAATTGCCTGATTTAGCTTCTACTACTGGAACTTCTACAGCATACATGTCGAATATTAGTTCTGCAGATAAGAGTAGTCACAATCTGCTTGATGAGATGAGTTTGTATATGGAGGACATGACTGATTTATATCTTGATGGTGATGACCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCGTTTATGACTGTGATACAACCATCTGAGAAATTGATAATGGATCATCTAGCTCAAGATTCCTCTCTGAACTCTGCTGCCTCCCTTCAGAGCTCAGTCTCAAGGGATCTTTCTGTTTCTGAACTTTCTTCAGCAAAGGAGTCGCCTGATCAATCAATAAAGAAGTGCAATCCTTCCAGTAAATTTTTGAGGCCAAGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGAGATGTTGCAGTGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCTGGGGCAGTTGCAGAAGAGATACATAGTGCTTTTGGTTATAACGAGGTTCCATTAGATACTGCTTCCTCAGAAAATTTGACTCTGATAGATATGGCAATTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAATTAGGCATTAACCTACGCTATTGTGTCAACTCAAGAAATATCTCTCCATCTAAACAAGTTCCTTGGACACTAGAATTAGGGATGCTGTTCTATGATAAACGTCCTGGTTCAGAATTTTCATCTTTAAATTGGCAGTCACGGAGATCTCGGTCCAAAAGGTTAAATCATTTAGCTCAGACTAAACCCTATGACAGCATTCAGAGAAAGAAGGATGATCAGTTGGAGGGAAGGACAGATGGTTCCACTACTAAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTTCTCTGTAGCAAGCATGGTCCATGAATTCCAAGAAAAGTCCAAAAATGTGTCAGCTGTCTTGAGTGGGGATCATGATGATTGTGTTTCTGAAAAAGAGCCTGACACTGAGACTTTCAGGAGTAATTGTGAATTGTCATGTGTCTCTGCTTCTACTGCAATGTCTCCTATGCATCATGAAATCCAGATTGCGGAGTTGCCCACTAGTGTGAGCTTGAACAATGCTACTTCACAACTTCCAAATTCCATTCCTGATCCTATTTTAATGATTGAAAAAATTGGGGCAGAGATTGAGAATCAAATCATGCATGAATTAGATATAGATGGAAAAAATGATTTAACACTTGATCATTCTAAGATGCATTACAATAGCAGTGTCTCAGAAGTATGTGGCATAGAGAGCCACGGTTGTCAGGACAAGAAATATTCTAGCTCACTCACAAATGCAACAGACAAAAATATTGAAATGTTTAGAAAGAATCAAGTTACAGAAGTAATTACCATTGATAGCAAATGTAATAGCTTAGGTTTAGATGATGAGGGCCATGAAGAATGTCAGTCTACCTGCAAAAGCAACAATGAGGAAACTGCTTTATCTACTGCTTCCTTGGTAAATCAACCTACTCTTGCCTCTATGGATGGAAGTTTTGAAAGTCCAAATAATAATAATGCTCCAGACAGAGTTAGCAATGCTATGTCTTTAAAAGAGACAACTGGTGAAGAAATTAATTCTTTGAATGAAAGGGACAAAGAACCTCTAAATGATGATAAACCAAGAAGTGAACATACTCCAAATGGAGAAGTTTGTGAAGTTCCAAGAGAGCTTTGTGCTGTTGCAGACTTGCATGAAACAGTAATCTTGAATGAAGAGATGCAGCAAGAAACCCGGGTTGGGAAAGGTAACAAAAGTGAAAATATTCAGCCCACTCATGTTTCAGCAAAACAATGGTGTGAATTCACAAGAGGGGAATATGCTGAGCAGTTAAATGATGAAATGATTTCAGAGTCTGTAAAGCAGTGTCAGACCCAGAATAAGAATAAAGTTAATGAGGAACCTGTTTCTAGTTATGTTGCAAAAGGTGAAAATAGAAGTTTAACTATCTCAGAATCAGGATGTTCTGATGTTTCAGTGGAAACCGGTCCTCAAGAAGACTCGAGTGTTCAAGTTATTTCACATAAAGAAAAGGAAATCGAAATCCAGCCAATTAATATAATTGAAGAGGAACTTTGCTCTGGTACTGAGACATCAGTAAAGGACTCTTCTGTATCAATGCAGGAATGTTCTGAAAATGAGGAAGAGACGTGTGTTAGAGAAGACGTGGATGGATGCGAAGTTCATTCCTCACAAGATAATAGGGAGCTGGAAAGTCGCGAGTTGAATGCAGCAGTTCCGAGATCAAATGCTGGAAAGAGAAAAAAGAGGCAAGTGGAACAGACAACAAAGAACGAATTCGATTGCTACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGGAAGATTACCAGGGGCAAAAGTGAGGGGGGCATCAGTCAAAATGACAAGGAAAATCATGTAGCTAAAAGGGCGCGGAGAGCTTCTGAAGTTTTGGTTCCTCACAAGAATAAAAAAGATGATGTTAAAAAGCCCCACAGGTGTGACCTTGATGGTTGCCATATGAGTTTCATGACCAAGGCTGAGTTACGGACACACAAACGTAACCTTTGCCCACATAAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTATGCTTCACCAGCGCGTGCATGAGGATGAGAGGCCTCTTAAGTGTCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCAAGGACAGAGCATATAAGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTTGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACTGGGCACTATGTGAAATCTGCTGCTTGA 4611 0.4097 MGNVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAGNFGICKIIPPLPKPSKKYVFSNLNSSLLKYPDLGTDNSSLGVCDSSKMGSRDSGSDGVLRAVFTTRHQELGQSVKKAKGTVQNPMSCVQKQVWQSGELYTLEQFESKSKSFAKSVLGMVKDVSPLVIEAMFWKAALEKPIYLEYANDVPGSAFGESKGHFRYSHRRQRKRNSYKRRLENSDCKQTETGSSRDAQSDETKGAFAQSLVETCLQMSKSATNVSTFSPNEPSQSSKEKSSDASNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAIEEVIRSEGYGGNIDHLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKKETKQAVLWNADLLPDSSKYCQLPDLASTTGTSTAYMSNISSADKSSHNLLDEMSLYMEDMTDLYLDGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPSEKLIMDHLAQDSSLNSAASLQSSVSRDLSVSELSSAKESPDQSIKKCNPSSKFLRPRIFCLEHAVQIVEMLQCKGGANVLIICHSDYQKIKAHAGAVAEEIHSAFGYNEVPLDTASSENLTLIDMAIDGEEHDECEDWTSKLGINLRYCVNSRNISPSKQVPWTLELGMLFYDKRPGSEFSSLNWQSRRSRSKRLNHLAQTKPYDSIQRKKDDQLEGRTDGSTTKKKLIQYSRRKFKSKQSCFSVASMVHEFQEKSKNVSAVLSGDHDDCVSEKEPDTETFRSNCELSCVSASTAMSPMHHEIQIAELPTSVSLNNATSQLPNSIPDPILMIEKIGAEIENQIMHELDIDGKNDLTLDHSKMHYNSSVSEVCGIESHGCQDKKYSSSLTNATDKNIEMFRKNQVTEVITIDSKCNSLGLDDEGHEECQSTCKSNNEETALSTASLVNQPTLASMDGSFESPNNNNAPDRVSNAMSLKETTGEEINSLNERDKEPLNDDKPRSEHTPNGEVCEVPRELCAVADLHETVILNEEMQQETRVGKGNKSENIQPTHVSAKQWCEFTRGEYAEQLNDEMISESVKQCQTQNKNKVNEEPVSSYVAKGENRSLTISESGCSDVSVETGPQEDSSVQVISHKEKEIEIQPINIIEEELCSGTETSVKDSSVSMQECSENEEETCVREDVDGCEVHSSQDNRELESRELNAAVPRSNAGKRKKRQVEQTTKNEFDCYNFIRSPCEGLRPRAGKITRGKSEGGISQNDKENHVAKRARRASEVLVPHKNKKDDVKKPHRCDLDGCHMSFMTKAELRTHKRNLCPHKGCGKKFSSHKYAMLHQRVHEDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVKSAA 1536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4615g00054 1536 ProSiteProfiles Zinc finger C2H2 type domain profile. 1504 1535 IPR013087 -
Gabi4615g00054 1536 MobiDBLite consensus disorder prediction 224 239 - -
Gabi4615g00054 1536 ProSitePatterns Zinc finger C2H2 type domain signature. 1446 1468 IPR013087 -
Gabi4615g00054 1536 MobiDBLite consensus disorder prediction 1115 1141 - -
Gabi4615g00054 1536 ProSiteProfiles Zinc finger C2H2 type domain profile. 1474 1503 IPR013087 -
Gabi4615g00054 1536 MobiDBLite consensus disorder prediction 196 239 - -
Gabi4615g00054 1536 Gene3D Cupin 9 464 - -
Gabi4615g00054 1536 MobiDBLite consensus disorder prediction 1111 1141 - -
Gabi4615g00054 1536 FunFam Probable lysine-specific demethylase ELF6 1471 1500 - -
Gabi4615g00054 1536 SUPERFAMILY beta-beta-alpha zinc fingers 1445 1481 IPR036236 -
Gabi4615g00054 1536 ProSitePatterns Zinc finger C2H2 type domain signature. 1506 1530 IPR013087 -
Gabi4615g00054 1536 Gene3D Classic Zinc Finger 1444 1528 - -
Gabi4615g00054 1536 SMART cupin_9 291 460 IPR003347 -
Gabi4615g00054 1536 MobiDBLite consensus disorder prediction 1374 1401 - -
Gabi4615g00054 1536 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Gabi4615g00054 1536 MobiDBLite consensus disorder prediction 1386 1401 - -
Gabi4615g00054 1536 SMART c2h2final6 1421 1443 IPR013087 -
Gabi4615g00054 1536 SMART c2h2final6 1444 1468 IPR013087 -
Gabi4615g00054 1536 SMART c2h2final6 1474 1498 IPR013087 -
Gabi4615g00054 1536 SMART c2h2final6 1504 1530 IPR013087 -
Gabi4615g00054 1536 MobiDBLite consensus disorder prediction 259 291 - -
Gabi4615g00054 1536 ProSiteProfiles Zinc finger C2H2 type domain profile. 1444 1473 IPR013087 -
Gabi4615g00054 1536 SMART JmjN_1 15 55 IPR003349 -
Gabi4615g00054 1536 ProSitePatterns Zinc finger C2H2 type domain signature. 1476 1498 IPR013087 -
Gabi4615g00054 1536 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Gabi4615g00054 1536 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1470 - -
Gabi4615g00054 1536 SUPERFAMILY beta-beta-alpha zinc fingers 1484 1527 IPR036236 -
Gabi4615g00054 1536 Pfam jmjN domain 17 50 IPR003349 -
Gabi4615g00054 1536 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Gabi4615g00054 1536 SUPERFAMILY Clavaminate synthase-like 292 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4615g00054 Gabi-Chr4615 635722 647517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4615g00054 1 867 C2H2 Transcription Factor Family AT5G04240 58.286 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4615g00054 JmjC 3.4e-36 CL0029